Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3865 737 0.0 seq2255 551 7e-152 seq721 111 2e-19 seq3842 82.4 9e-11 >seq3865 Length=1303 Score = 737 bits (816), Expect = 0.0 Identities = 764/995 (77%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| |||||| | || ||||| | ||||| | || |||||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 |||||||| | || ||||||| ||||| |||||| |||| ||| | || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || |||||||| || ||||||||||| || ||||||| | | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 |||||| |||||||| || | ||| |||| ||||| |||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| ||||| | ||||||||| | || ||||||||||||| |||| | |||| Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 180047 CTTCCACTTCCTGATTGGCATCTATGC--CTACATGGGTCGTGAGTGGGAACTTTCTTAT 180104 | |||||| || ||| | | | ||| ||||||||||||||| |||||| | |||| Sbjct 579 TTGCCACTT-CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 180105 CGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 || || |||||||| || |||||| ||||| || ||||| ||||| || || || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGC 180224 || || ||| | |||| ||| |||||||||||||||||||||||| ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 |||||||| || ||||||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || ||||||||| | || || || ||||| || || ||||| | ||||| ||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| | ||||| ||||| | | |||||||| ||||||| || || ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTC 180464 |||||| || |||||||| ||||| || ||||||||||| ||||| || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 180465 GGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTG 180524 |||||| | || ||||| || || || ||||||||||| |||||| | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || || |||||||| | || |||||||||||||| | || || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||||| |||||||||||||||||||| || | |||| |||||||||||| | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 |||||||| ||| | ||||||| ||| | ||||||||||| |||||||| ||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 180705 GCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 || ||||||||||| || ||| | || ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 551 bits (610), Expect = 7e-152 Identities = 714/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 181454 GACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 181513 ||||| || || || || || ||||| ||| || | || || || |||||| | ||| Sbjct 354 GACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATTACCATGTGCTTACTTCGCA 413 Query 181514 ATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCG 181573 | || || ||| | ||||| |||||||||||||| || |||||||| ||||| || || Sbjct 414 GTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTGGTACACACACGGCTTAGCT 473 Query 181574 TCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCT 181633 |||| ||| | || ||| ||| ||| | || || ||||| || || || || | Sbjct 474 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGTTTCTACACCAGCAAATAGC 533 Query 181634 ATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTG 181692 |||| ||| ||| || || | ||| ||||||||||||||||| || || || || || Sbjct 534 ATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTCAAGGTGACTTTACACGTTG 592 Query 181693 GGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGG 181752 | |||||||| || | ||||||||| | || | ||||| | || | | | || || Sbjct 593 GTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGGTTCATTTGGTTTAATTGG 652 Query 181753 TTTTATGCTCAGGCAATTTGAACTTGCTCGTCTAATCGGAATCCGACCCTACAATGCGAT 181812 ||| ||| | | ||||||||| | || ||| | | | || || ||||| || || Sbjct 653 TTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACTTACGTCCATACAACGCTAT 712 Query 181813 TGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACA 181872 ||| || || | |||||||||||||||| || || || | || || ||| | || || Sbjct 713 TGCATTCTCTGCTCCTATTGCTGTATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCA 772 Query 181873 ATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTT 181932 ||| ||||||||||||| || ||||| ||||| || || || ||||| ||| | | || Sbjct 773 ATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATT 832 Query 181933 CCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTAT 181992 | ||||||| || || || |||||||| || || ||||| |||||||||||||||||| | Sbjct 833 CTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGT 892 Query 181993 CCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCA 182052 | |||| || ||| | | ||| |||||||||| || || || || || | | | | Sbjct 893 TTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGA 952 Query 182053 AGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTA 182112 |||||||||| || || || ||| |||||| | ||||||||| ||||||||| || Sbjct 953 AGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATA 1012 Query 182113 TTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAA 182172 || |||||||| || ||||| ||||||||||| ||||||||| |||| || || || Sbjct 1013 CTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAA 1072 Query 182173 GAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCAT 182232 | ||||| || ||||| ||| | || || || |||| ||| | |||| | || Sbjct 1073 ACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTAT 1132 Query 182233 CGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAG 182292 ||| | |||||| | || | ||| | |||||||| ||||| || || |||||||| | Sbjct 1133 TGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCG 1192 Query 182293 AGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGG 182352 ||| ||||||||||||||||||| ||||||||||| || ||||| || | |||||||| Sbjct 1193 TGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGG 1252 Query 182353 TCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGA 182412 | | ||||| ||| | || | || ||||| ||||| || || ||||| || || Sbjct 1253 TATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGA 1312 Query 182413 AGTATTACCCAGAGGTAACGCACT 182436 ||||||||| | |||||||| || Sbjct 1313 AGTATTACCTCGTGGTAACGCTCT 1336 >seq721 Length=61483 Score = 111 bits (122), Expect = 2e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 171942 CCATATTCCTGCCGTGCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACG 172001 || || || ||||||||||||||||| || ||||| ||||| || | ||| || || Sbjct 39591 CCCTACTCTTGCCGTGCCGGTGCCTGCTCAAGCTGCGCTGGCAAGGTCGAGGCCGGCACC 39650 Query 172002 GTAGATCAGTCAGAGCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTG 172061 || || ||||| || || || ||||| ||||||| || || | | || ||||| ||| Sbjct 39651 GTCGACCAGTCTGACCAGTCCTTCCTGGATGATGGCCAGATTGGCAACGGCTTCGTCCTG 39710 Query 172062 ACCTGTGTTGCTTATCCTACAAGCGATTGTGTTG-TCCTGGCTGAGCAGGAGGATAGTCT 172120 ||||| ||||| || || || ||||| |||| | |||| | ||||||||||| | || Sbjct 39711 ACCTGCGTTGCGTACCCCACCAGCGA-TGTGACGATCCTCACCGAGCAGGAGGAGAAGCT 39769 Query 172121 TTACTGAG 172128 |||| || Sbjct 39770 GTACTAAG 39777 >seq3842 Length=1340 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 || |||||||||||| || ||||| || ||||||| || ||||||||||||||| || Sbjct 788 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 729 Query 141315 CTACCTGGGGAGT 141327 ||||||||||||| Sbjct 728 CTACCTGGGGAGT 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610365501904080