Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3865 686 0.0 seq2255 536 1e-147 seq292 86.0 7e-12 >seq3865 Length=1303 Score = 686 bits (760), Expect = 0.0 Identities = 754/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 || || |||||| | || || || | ||| | | || | |||||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACC 169520 |||||||| |||||| | |||||| || | ||| |||||| | || ||| ||||||| || Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATC-TGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 ||| || || |||||||| ||| | |||||||| | |||||||| || || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 |||||| |||||||| || | || | || |||||||| || |||||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| ||| || | || || ||||| || || ||||||||||| || || | | Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 169701 CTTCCACTTCCTTATT-GGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATAC 169758 | |||||| |||||| ||| | | | || |||||||| | | |||||| |||| | | Sbjct 579 TTGCCACTT-CTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 169759 AGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTC 169818 | ||||| |||||||| |||||| ||| || |||||||||||||| | ||||| Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 || || |||||| | ||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 || || |||||||||||||| ||| |||| |||||||| || || ||||| || ||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCAT 169998 || ||||||||| ||| || || || | || || || ||||||||||| |||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 169999 GGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTAT 170058 ||||| | ||||| || ||| ||||| | |||||||| || | || ||| ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 170119 GGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTA 170178 |||||| | || ||||| || ||||||||||||||||| | ||||||||||| || Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 170179 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 170238 || | || ||||| | || | ||||| || || | ||| | | || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 170239 AACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCA 170298 ||| | || ||||||||||| ||||||||||||||||| || | || | | Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 170299 ACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAAT 170358 || |||| ||| | | ||| | || ||||| ||||||||||| ||||| ||| | || Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 170359 GCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 || ||||||||||| |||||| |||| |||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 536 bits (594), Expect = 1e-147 Identities = 744/1043 (71%), Gaps = 23/1043 (2%) Strand=Plus/Plus Query 170525 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTC 170584 |||||| |||| ||||||||||||| ||| ||||| |||||| |||| ||||| Sbjct 320 TTGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 379 Query 170585 TGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTAC 170644 || | ||||| | || ||||| ||| | || | ||||||||||| || ||||| Sbjct 380 AGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 170645 CTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTT 170704 || ||||| || ||||| ||||| || | ||| | || || | || || |||||||| Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 170705 CCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 170764 | |||| || || ||||| ||||| | | |||| ||| | | | ||| | || Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCTTTATTATTCTTATG 559 Query 170765 GGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTT 170824 ||| |||||||| |||||| ||| ||||||| ||||| || ||||||||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 170825 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGC 170884 | | || ||||| || ||||| | || ||||||||| | | |||||||| ||||| Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 170885 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 170944 | | || | | | || |||||||| | |||||||||||| ||| || || || Sbjct 680 ACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATT 739 Query 170945 CACTAGCATCTTTC-TGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 |||| || |||| | || || || ||||||| |||||||||| || || | Sbjct 740 CACT-TCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTT 798 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| || ||||| || |||| ||||||||| | || || ||||||||| || Sbjct 799 TTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGC 858 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 | || ||||| ||||||||||||||||| || | |||||| || ||||||||||| | Sbjct 859 TTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 918 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 |||| ||||| || || | |||||||| | ||||||| | | | || || Sbjct 919 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGAC------GGTGACGGTGCGAA-- 970 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 ||||||||||| || | || || || | ||||||||| ||| || Sbjct 971 -------------CACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTA 1017 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || |||| |||||| | |||||||| || || || ||| |||||||||| |||||| | | Sbjct 1018 TGGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTT 1077 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||||||| | ||||| ||||| || || | ||| | |||| ||| |||| ||| Sbjct 1078 GGTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTG 1137 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | | ||| ||||| | ||| | | || ||||| || || || ||||| || | |||| Sbjct 1138 TAATTGGTTTAGCATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAG 1197 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 ||||||||||||||||||| || ||||||||||| || || ||||||||||||||||| Sbjct 1198 CAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTC 1257 Query 171484 GAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGT 171543 | || |||||| | | |||||||| ||||| || ||||||||||||||||| | Sbjct 1258 GTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTAT 1317 Query 171544 TACCAAGAGGTAACGCACTTTAA 171566 |||| | |||||||| || ||| Sbjct 1318 TACCTCGTGGTAACGCTCTATAA 1340 >seq292 Length=128933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 169597 GTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACT 169656 || || ||| | || |||||||| || |||||||||||||| | |||||||| ||| || Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 169657 GTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTAT 169715 | || |||||||| || || |||||||| | || || || | | |||||| ||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTAT 40672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579183100863680