Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq3865 765 0.0 seq2255 554 5e-153 >seq3865 Length=1303 Score = 765 bits (848), Expect = 0.0 Identities = 770/995 (77%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| |||||| | || || ||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 ||||||| |||||||| || ||||| ||||||| |||||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| ||||| | || |||||||| || ||||||||||||| |||| || | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 168161 TCTTTCACTTCCTCATCGGTATCT-ATGCATACATGGGACGTGAATGGGAACTTTCATAT 168219 | | |||||| | | ||| | | ||| |||||||| |||||||||||| | || | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 168220 CGTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGT 168279 |||||||||||||||||||||||| ||| || |||||||||||||| || || || | | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 168280 GCAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 168339 ||||| ||| || | || ||| ||||||||||| |||||||| | ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 168340 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 168399 || || || || ||||||| |||| | || ||||||||||| ||||| || || ||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 168400 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 168459 || ||||| ||| | || |||||||| || |||||||| ||| || ||| |||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 168460 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 168519 || ||| ||||| |||||| | | | || || ||||||| |||||| ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 |||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 |||||||| || |||||||||||||||||||||||||| || || || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 168640 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 168699 ||||| |||||||| |||| ||||||||||| || | || | || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 168700 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 168759 ||||| |||||||||||||||||||| || | |||| ||| |||||||| || ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 168760 ACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 168819 || ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 168820 GCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 || ||||||||||| || || | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 554 bits (614), Expect = 5e-153 Identities = 736/1019 (72%), Gaps = 6/1019 (1%) Strand=Plus/Plus Query 169304 TGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCT 169363 |||||||||| || |||||| | | ||||| || |||||| | |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 169364 GGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCG 169423 || || | || | || ||| || | || | || || ||| | |||||||| | Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 169424 TTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTC 169483 ||||||||||| |||||||| ||||| | ||| | |||||||||||| ||||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | ||||||||||| |||||| || | |||| ||||| | | || ||||| Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCTTTATTATTCTTATGG 560 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||| ||||| || || || ||||||||| | || ||| | ||| ||| Sbjct 561 GGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTT 620 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 | || | || ||| |||||| || |||||||||||| | | || |||||| | ||| Sbjct 621 ATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCA 680 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 ||| || | | ||||| || || |||||||||||||||| ||||||||||||||| Sbjct 681 CGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTC 740 Query 169724 G--TCAGTGTCTTTCTTA-TCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCC 169780 ||||| ||||||| | ||||| | || || || |||||||||||||| Sbjct 741 ACTTCAGT---TTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 169781 TTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACG 169840 ||||| || | ||||||||| | ||| | || ||| | || || ||||||||||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 169841 TTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCT 169900 | || |||||||||||||||||||| || || | || || | || || | | |||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 169901 ATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTC 169960 || || |||| ||| || || |||||||| | |||||||||||| || || || ||| Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 169961 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 170020 || || | | || || | |||||| || || |||||||| ||||||||||| ||| Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 170021 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTG 170080 ||||| || ||||||||| |||| || || ||||| |||||| | || || |||||||| Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 170081 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 170140 || || || |||| ||| | |||| || ||||||| | ||||| | || | || Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAAC 1157 Query 170141 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 170200 | ||||||||||| ||||| || || || | ||||||||||| ||||| || || Sbjct 1158 TTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAA 1217 Query 170201 ACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCT 170260 || |||||||| ||||||||||| | |||||||| ||||||| ||| |||| || Sbjct 1218 ACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 1277 Query 170261 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || ||||| |||||| || | |||||||||||||| | || | |||||||| || Sbjct 1278 GACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574444143866160