Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq3865 791 0.0 seq2255 567 8e-157 seq292 86.0 7e-12 >seq3865 Length=1303 Score = 791 bits (876), Expect = 0.0 Identities = 777/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 ||||| || ||| | ||||| || | ||||| | || | |||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||| ||| ||| || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 340 ATGATTCCTT-GCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || |||||||| ||||| |||||||| ||| | ||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 ||||||| |||||||| || | || | || || || |||||| | ||||||||||| Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 | |||||||| ||||| | || || ||| | |||||||||||||||| |||| | ||| Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 164083 TCTTCCACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTGTCTTAC 164141 | | ||||||| | | ||| | | ||| |||||||||||||| |||||| | |||| | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 164142 CGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCC 164201 ||| | ||||||||||| ||||| ||| |||||||||||||| |||||||| || | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 164202 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGC 164261 ||||| ||| | |||| ||| ||||||||||||| |||||||||| ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 164262 ATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCAC 164321 || ||||| || ||||||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 164322 CCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164381 || ||||| ||| | || |||||||| || ||||| |||||| | ||| |||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 164382 GGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTAT 164441 |||||| | ||||| ||||| | | |||||||| || |||| || || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 164442 GGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTT 164501 |||||| || |||||||| ||||||||||||||||| || || ||||||||||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 164502 GGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 164561 |||||| | || |||||||||||||||||||||||||| ||||| || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 164562 GCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTC 164621 ||||| |||||||| | || ||||||||||| || | ||| | || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 164622 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164681 ||||| |||||||||||||||||||| || | | || ||| |||||||| | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 164682 ACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAC 164741 |||||||| ||| | ||||||| ||| | ||||||||||| |||||||| |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 164742 GCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 || |||||||||||||| || | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 567 bits (628), Expect = 8e-157 Identities = 741/1020 (73%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 165191 TGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 165250 |||||||||| | || |||||| | | ||| |||||||| || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 165251 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 165310 ||| | | || || || |||||| | || | || |||||| | ||||| |||||| Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 165311 TTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTT 165370 || | || |||||| || ||||| || || | ||| || | || ||| ||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 165371 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTC-TG 165429 | ||||| || |||||||| |||||| | |||| ||| ||| || | |||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 165430 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 165489 ||||||||| |||||||| || || | ||| |||||||| || | |||||||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 165490 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGC 165549 | | || | ||||| | || | | |||||||||||||| | ||||| |||||| | || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 165550 ACGTCTCATCGGTATC---CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 165606 |||| ||| | || | ||||| ||||| |||||||| ||||||| |||||| ||||| Sbjct 680 ACGT-TCA--GTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 165607 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 165666 || | || || | || |||||| | |||||||| ||||||| || ||||| Sbjct 737 ATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 165667 TTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 165726 ||| || || || ||||||||| | ||| | | ||| | || || ||||| |||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 165727 CTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 165786 | || || || || |||||||||||||| ||| | | |||| ||| || | | ||| Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 165787 CATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTT 165846 || || |||| ||| || || || || | | | |||| ||||||| ||| || || || Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 165847 CAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTT 165906 | ||||| || | ||||||| |||||||| ||||| |||||||||||||||||||| Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 165907 CTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 165966 ||||||||| ||||||||| |||| || || || | ||||| || ||||| ||| | Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 165967 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166026 || || || |||| ||| | |||| | || ||| | |||||| | || | || Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 166027 CCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGA 166086 | | |||||||| ||||| || || ||||| || | |||||||||||||||||||| || Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 166087 AACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGT 166146 ||| |||||||| |||||||| || | ||||||||| ||||||||||| |||| | Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 166147 CGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||||||||| || || ||||| |||||||| | ||| | |||||||| || Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 >seq292 Length=128933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 163992 TCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGG 164051 || || || |||||| | ||||||||||| | |||||||| ||||| | || |||||| Sbjct 40777 TCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAATGG 40718 Query 164052 CTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTC 164093 | |||||| |||||||| |||| | ||||| | ||||||| Sbjct 40717 TTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556896243680880