Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3865 607 9e-169 seq292 86.0 7e-12 >seq3865 Length=1303 Score = 607 bits (672), Expect = 9e-169 Identities = 709/952 (74%), Gaps = 4/952 (0%) Strand=Plus/Plus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGT 168591 |||||||| ||||| | ||||| || || |||||||||||| || | ||| ||||| | Sbjct 322 GGTTGGTTTGGTGTAATCATGATTCCTTGCTTATTAACAGCAACATC-TGTATTCATCAT 380 Query 168592 TGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGC 168651 || || |||| || || || || || |||||||| ||| | ||||| || | ||| | Sbjct 381 CGCTTTCGTTGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTC 440 Query 168652 TCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 168711 | || | || || ||||||||||| || ||||| || | || |||| ||||| || || Sbjct 441 TTTATTATACGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGG 500 Query 168712 TCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGG 168771 | |||||||||||||| | |||||||| || | | || ||||||||||| || ||||| Sbjct 501 TTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGG 560 Query 168772 TCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGAC 168830 ||||||||| || | | | ||||||| || | || | | ||| |||||||||| | Sbjct 561 TCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTTGCTG-CTACATGGGTCGTG 619 Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 | ||||||||||| | | | |||||||| | || |||||| ||| ||||| || |||| Sbjct 620 AATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCAC 679 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 |||| | || || |||||| ||| | | ||||| | ||||| ||||| ||||||| Sbjct 680 CAGTTGCAGCTGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTG 739 Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010 | ||||||||| |||| |||||||| || |||||||||||| ||||||||||||| || | Sbjct 740 ACGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAAC 799 Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTC 169070 ||||||| |||||||| || ||||| ||| ||| || || ||| | || ||||| ||| Sbjct 800 ACAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTT 859 Query 169071 TATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGG 169130 ||||||| |||||||| ||||| | || ||||||||| ||||| | || || ||||| Sbjct 860 TATTCTCTGCAATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAA 919 Query 169131 AAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTG 169190 | ||||| ||| ||||||| ||||||||||| |||||||| || || || || | Sbjct 920 ACGAATCAGCTAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAG 979 Query 169191 CAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAA 169250 | || || || ||||| ||| | ||||| ||||| || || ||||||||||| | Sbjct 980 CTGCTCACGGTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTT 1039 Query 169251 GTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTA 169310 | ||||||||| |||| | | || || | || | ||||| || || | ||| Sbjct 1040 CATTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTT 1099 Query 169311 TCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTA 169370 | | || ||||| |||||| | ||||| || ||||| |||||||||||||| || | Sbjct 1100 TATCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTC 1159 Query 169371 ACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAG 169430 | ||| | | || |||| |||| | | ||| | || ||| | |||||||||| Sbjct 1160 AAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAG 1219 Query 169431 TAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 ||||||| || |||||||| ||||||||||| ||||||||||| |||| ||| Sbjct 1220 TAATGCACGAACGTAACGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq292 Length=128933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 168686 GTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACA 168745 || || ||| |||| ||||| || ||| |||||||||||||| | |||||||| || | Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 168746 ATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTA 168802 | || || |||||||| || |||||||| |||| || || | | ||||||| || Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTCTTA 40673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564412658256960