Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq3865 695 0.0 seq2255 518 4e-142 seq292 82.4 9e-11 >seq3865 Length=1303 Score = 695 bits (770), Expect = 0.0 Identities = 749/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| || ||| | || || ||| | ||| | | || | |||||||| |||||| || Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||| || || || | |||||| || | |||||| | || ||| ||||||| ||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || || |||||||| ||| | ||||||||| | |||||||| ||||| ||||||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 ||||| |||||||| || | || | || ||||| || ||| | ||||||||||| | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | |||| || ||||| ||||| ||||||||||| || || | | Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 172120 TTCCACTTCCTTATCGGTATCT-CAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||||| | | ||| | | | || |||||||| | | |||||| |||| | | | Sbjct 580 TGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 ||||||||| | |||||||| |||||| || || ||||| || |||| || ||| Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 || ||| | | || || ||||||| |||||||||||||| |||||||| ||||||| Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 || ||||| |||||||| ||| |||| |||||||| || || ||||| || ||||| || Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 ||||||||| ||| || || || | ||||| || ||||||||||| ||||||||||| Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 ||||||||||||||||||| ||||| | || ||||||||| |||||| ||| || Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 ||| ||||| ||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 |||| | || ||||| || ||||| ||||||||||| | | ||||||||| |||| Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 172599 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 172658 | || ||||| | || | ||||| || || | ||| | | || ||||| ||||| Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAA 1118 Query 172659 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTAC 172718 ||||||||||||||||||||||||||||||||| || || | ||| | | || Sbjct 1119 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACAC 1178 Query 172719 ATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGC 172778 |||| |||| | | ||| | || ||| ||||||||||||| ||||| ||| | || || Sbjct 1179 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 1238 Query 172779 ACACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||| ||||| | ||||||| Sbjct 1239 GCACAACTTCCCTCTAGACTTAGCTTCTG 1267 >seq2255 Length=6208 Score = 518 bits (574), Expect = 4e-142 Identities = 741/1043 (71%), Gaps = 23/1043 (2%) Strand=Plus/Plus Query 172947 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 173006 |||||| |||| ||||||||||||| ||| |||||||||||| | || ||||| Sbjct 320 TTGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 379 Query 173007 TGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTAC 173066 || | ||||| |||| ||||||||| | | | ||||||||||| || ||||| Sbjct 380 AGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 173067 CTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTT 173126 || ||||| || ||||| ||||| || | || |||| || | ||||| ||||| Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 173127 TTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTG 173186 ||||| || || || || ||||| | | |||| ||| | | | ||| | || Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCTTTATTATTCTTATG 559 Query 173187 GGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTT 173246 ||| |||||||| |||||| || |||||||| ||||| || || ||||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 173247 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGC 173306 | | || ||||| || ||||| | || ||||||||| | ||||| ||||| ||||| Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 173307 AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTT 173366 | | || | | | || |||||||| | |||||||||||| ||| || || || Sbjct 680 ACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATT 739 Query 173367 CACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATT 173426 |||| | || ||||| ||||| |||| || |||||||||| || ||| || Sbjct 740 CACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTT 799 Query 173427 CGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATT 173486 ||||| || |||||||| |||| ||||||||| | || || ||||||||| || | Sbjct 800 TGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCT 859 Query 173487 GAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCAT 173546 || ||||| ||||||||||||||||| || | |||||| || ||| ||||||| || Sbjct 860 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 919 Query 173547 TCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAA 173606 ||| ||||| || || | |||||||| | ||||||| ||| ||| Sbjct 920 TCACGGTGCTACTGTTGAAAACACATTATTTGAAGAC------------GGTGACGGTGC 967 Query 173607 GATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTAT 173666 || || || ||| | ||||| | || || || | ||||||||| || ||| Sbjct 968 GA--------AC-ACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTAT 1018 Query 173667 GATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATT 173726 | |||| || ||| | |||||||| || || || ||| | || || ||||||||| | | Sbjct 1019 GGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTG 1078 Query 173727 TTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTAT 173786 ||||||||| ||||||| |||||||| || | ||| | |||| ||| | || ||| | Sbjct 1079 GTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGT 1138 Query 173787 CGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | ||| | ||| |||| |||| | || |||||||| || || ||||| || | |||| Sbjct 1139 AATTGGTTTAGCA-TTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAG 1197 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 ||||||| ||||||||||| || ||||||||||| || || ||||||||||||||||| Sbjct 1198 CAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTC 1257 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| | || ||| ||||| ||||| || ||||| ||||||||||| | Sbjct 1258 GTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTAT 1317 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 |||| | |||||||| || ||| Sbjct 1318 TACCTCGTGGTAACGCTCTATAA 1340 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 172015 GTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACC 172074 || || ||| | || ||||| || ||| | ||||||||||| | |||||||| ||| | Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 172075 GTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATC 172134 |||| |||||||| ||||| |||||||| | || || || | | |||||| |||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTATC 40671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588021047674720