Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq3865 816 0.0 seq2255 549 2e-151 >seq3865 Length=1303 Score = 816 bits (904), Expect = 0.0 Identities = 773/982 (79%), Gaps = 6/982 (1%) Strand=Plus/Plus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 162683 TATTCCACTTCCTGATCGGCATCTATGC--CTACATGGGACGTGAATGGGAACTCTCTTA 162740 | | ||||||| | | || | | ||| ||||||||| |||||||||||| | |||| Sbjct 578 TTTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTT 635 Query 162741 CCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATC 162800 |||| | |||||||||||||||||| ||||| ||||||||||| |||||||| || | Sbjct 636 CCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTAC 695 Query 162801 GGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGG 162860 ||||| ||| | |||| ||| ||||||||||||| |||||||||| ||||| || || Sbjct 696 TGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGG 755 Query 162861 TATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 162920 ||| |||||| ||||||| |||| | || |||||||| || |||||||| || ||||| Sbjct 756 TATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCA 815 Query 162921 TCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCA 162980 || ||||||||||| ||||| || ||||| || |||||||| | ||| ||||||||| Sbjct 816 CCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCA 875 Query 162981 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTA 163040 ||||||||| ||||||||||| | ||||||| || ||||||| || ||| ||| Sbjct 876 CGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGC 935 Query 163041 TGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTT 163100 ||||||| ||||||||||| ||||| |||||||||||||| || || || |||||||| Sbjct 936 TGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTT 995 Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160 |||||||| || |||||||| || |||||||||||||| ||||| || ||||||||| | Sbjct 996 TGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 1055 Query 163161 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATT 163220 ||||| |||||||| |||| ||||||||||| || | || | ||||| ||||| || Sbjct 1056 AGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTT 1115 Query 163221 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 163280 |||||| |||||||||||||||||||| || | |||| ||| |||||||| || || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 163281 CACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAA 163340 ||| ||||| ||| | | |||||||| || ||||||||||| |||||||| || || Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 163341 TGCTCACAACTTCCCACTTGAC 163362 || ||||||||||| || ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGAC 1257 >seq2255 Length=6208 Score = 549 bits (608), Expect = 2e-151 Identities = 741/1024 (72%), Gaps = 6/1024 (1%) Strand=Plus/Plus Query 163618 TGGTTTGATGTCCTGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTC 163676 ||||| |||| | || |||||| ||| | | || ||||||||||| | |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 379 Query 163677 TGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAAC 163736 |||||| |||| | || |||||| | ||| | ||||| ||| | |||||||| || Sbjct 380 AGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 163737 TTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTT 163796 ||| ||||| || |||||||| || || | || ||||| || | || ||| ||| || Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 163797 TCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-T 163855 | || || ||||| || || || || | |||| ||| ||| || || |||| | Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTAT 558 Query 163856 GGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATT 163915 |||||||||| ||||| || || || || ||| |||||||| || | ||| || Sbjct 559 GGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 163916 TTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTG 163975 || | || | ||||| | |||| | | |||||||||||| | || ||||||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 163976 CTCGCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTC 164034 | || | | | | | | | || ||||| || ||||| ||||||| |||||||||||| Sbjct 679 CACGT-TCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTA 737 Query 164035 TTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCT 164094 ||| | || || | || |||||| | ||||||||| |||||||||| ||||| | Sbjct 738 TTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 164095 TTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACT 164154 ||||| || || ||||||||| | ||| |||||||| | || || || || |||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 164155 TTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCT 164214 | ||||| ||||| |||||||| ||||||||| | |||| | || || ||| |||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 164215 ATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTT 164274 |||||||| | || |||||||| ||||| | |||||| || || || ||||| || Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 164275 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 164334 || || | | || || | |||||| || || |||||||| ||||||||||| ||| Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 164335 TGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 164394 ||||| || |||||||||||||| || || ||||| || ||| | || || |||||||| Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 164395 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 164454 || || || |||| ||| |||||| || ||||||| | ||||| | || | || Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAAC 1157 Query 164455 CTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG 164514 | ||||||||||| || || ||||| ||| | ||||||||||| || |||||||| Sbjct 1158 TTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAA 1217 Query 164515 ACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTT 164574 || ||||| || || |||||| | | || ||||| | ||||| ||| | || | Sbjct 1218 ACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 1277 Query 164575 GACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTT 164634 ||||| || ||||| || || ||||||||||||||| | || | ||||| || || Sbjct 1278 GACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTA 1337 Query 164635 TAAT 164638 |||| Sbjct 1338 TAAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557555409880400