Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq3865 693 0.0 seq2255 517 1e-141 >seq3865 Length=1303 Score = 693 bits (768), Expect = 0.0 Identities = 749/995 (75%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 167088 TTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTG 167147 || || || ||| |||| ||| | |||||| | || |||||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 167148 ATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCC 167206 ||||| ||| || | ||||||| |||||| ||||||||||| ||||| | ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 167207 TCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 167266 ||| || |||||||| |||||||| ||||||||| ||||||| | | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 167267 CATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCAT 167326 |||||| |||||||| || | ||| ||||||| ||||||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 167327 CTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGT 167386 |||||||| ||| | | ||||||||||| ||||| |||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 167387 TTTCCACTTCCTGATTGGCATCTATGC--CTATATGGGTCGTGAGTGGGAACTCTCTTAC 167444 || |||||| || ||| | | | ||| ||| ||||||||||| |||||| | |||| | Sbjct 579 TTGCCACTT-CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 167445 CGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCT 167504 ||| | ||||||||||| |||||| ||| || |||||||| ||||| || || || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 167505 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGT 167564 || || ||| | |||| ||| ||||||||||||| |||||||||| |||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 167565 ATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 167624 || |||||||| ||||||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 167625 CCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCAC 167684 || ||||| ||| | || |||||||| || || || |||||| | ||| |||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 167685 GGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTAT 167744 |||||| | ||||| ||||| | | |||||||| || |||| || || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 167745 GGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTC 167804 |||||| |||||||| || ||||| || || |||||||| |||||||| |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 167805 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTG 167864 ||||| | || ||||||||||| || ||||||||||| || || | ||||||||||| Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 167865 GCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTC 167924 || || |||||||| | |||||||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 167925 AACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCT 167984 ||||| |||||||||||||||||||| || | |||| | ||| || | Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| ||| | ||||||||||| | ||||||||||| |||||||| ||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 168045 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 || |||||||||||||| ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 517 bits (572), Expect = 1e-141 Identities = 730/1020 (72%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 168480 TGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCT 168539 |||||||||| | || |||||| | | || |||||||| || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 168540 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCT 168599 ||| | | || || || |||||| | || | || |||||| | ||||| ||| || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 168600 TTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 168659 || || || |||||| || ||||| || || | ||| || | || || ||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 168660 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTC-TG 168718 | ||||| || ||| ||| |||||| || |||| ||| ||| || | |||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 168719 GGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTT 168778 ||||||||| || ||||| || || | |||||||||||||| || | |||||||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 168779 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGC 168838 | | || | ||||| | || | | |||| ||||||||| | ||||| |||||| | || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 168839 ACGTCTCATCGGTATC---CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 168895 |||| ||| | || | ||||| ||||| |||||||| ||||||| |||||| ||||| Sbjct 680 ACGT-TCA--GTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 168896 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 168955 || | || || | || |||||| | |||||||| ||||||| || ||||| Sbjct 737 ATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 168956 TTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGAC 169015 ||| || || | ||||||||||| ||| | | ||| | || || ||||| |||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 169016 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGC 169075 || || ||||| || ||||||||||| || ||| |||| || | || || | | ||| Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 169076 CATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTT 169135 ||||| |||| ||| || || || || | | | |||| ||||| || || || || Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 169136 CAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTT 169195 | ||||| || ||||| | ||| || || || || |||||||||||||||||||| Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 169196 CTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 169255 ||||||||| ||||| ||| |||| ||| || || | ||||| || ||||| ||| | Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 169256 GTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 169315 || || || |||| ||| | |||| | || ||| | |||||| | || | || Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 169316 CCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGA 169375 | | |||||||| ||||| ||||| ||||| || | ||||||||||| |||||||| || Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 169376 GACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTAT 169435 ||||||||||| || |||||||| | || |||||| ||||||| ||| | || || Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 169436 TGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || ||||| ||||| || || ||||| || |||||| | || || ||||| || || Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560579254824800