Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3865 697 0.0 seq2255 576 2e-159 seq292 93.3 5e-14 >seq3865 Length=1303 Score = 697 bits (772), Expect = 0.0 Identities = 757/995 (76%), Gaps = 12/995 (1%) Strand=Plus/Plus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 ||| || |||||| | ||||| || | |||||| | || |||||||||| ||||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGCTC 164881 ||||| || || || | | || ||| | ||| || || | || ||| | || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAACA-TCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | || || ||||| || ||||| |||||||| || | |||||| || | |||||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 ||||||| ||||||||||| | || |||||||||| || || | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 | |||||||||||| | | || || ||||| |||||||||||||||||||| || | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | ||||||| | | ||||| ||||||||||||||||| |||||| | |||| || Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||| ||||| ||||| || ||||| || || |||||| | | Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 |||||||| | |||| ||| |||||||||| |||||||| ||||||||| | |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATC 165301 | ||||||||||| |||| ||| |||| |||||||| ||||| ||||| |||||||| | Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 165302 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 165361 | ||||||||| | || |||||||| || || ||||| ||| | |||||||| ||||| | Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 165362 GAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACTA 165419 | | | ||||| || || | |||| || ||||||||| | || |||| ||| Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAA--AACGAATCAGCTAACGC 935 Query 165420 CGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTT 165479 ||||| || || ||||| ||||| || || |||||||| ||||| ||||| ||||| Sbjct 936 TGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTT 995 Query 165480 CGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 165539 |||||| | |||||||||||||| || |||||||| || ||||| | ||||||||| | Sbjct 996 TGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 1055 Query 165540 CGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCAT 165598 || || ||||||||| | |||||||||||||||||| | ||| ||| | || ||||| | Sbjct 1056 AGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT-TTATCAACTATGGCTT 1114 Query 165599 TCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA--GAACAAAATCAT 165656 ||||||| |||||||||||||||||||| || ||||||| ||| | || | Sbjct 1115 TCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAA 1174 Query 165657 CCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCG 165716 | |||||||||||| | | ||||||||| | ||||||||||| ||||| || || Sbjct 1175 AC--ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACG 1232 Query 165717 TAACGCTCACAACTTCCCCCTCGACCTCGCTGCTG 165751 |||||| ||||||||||| || ||| | ||| ||| Sbjct 1233 TAACGCGCACAACTTCCCTCTAGACTTAGCTTCTG 1267 >seq2255 Length=6208 Score = 576 bits (638), Expect = 2e-159 Identities = 744/1022 (73%), Gaps = 4/1022 (0%) Strand=Plus/Plus Query 166158 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCT 166217 |||||||||| | |||||||||| | | ||| |||||||| || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 166218 GGACTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTAC 166276 ||| || || | || ||| |||||| | || | || |||||| | ||||| ||||| Sbjct 381 GGA-TTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 166277 TTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTT 166336 ||| || || |||||| || || || | || | ||| | || ||| ||||| Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 166337 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTC-T 166395 | ||||| || |||||||| |||||| || |||| ||| ||| || || |||| | Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCTTTA-TTATTCTTAT 558 Query 166396 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCT 166455 |||||||||| |||||||| || || | ||||| |||||||| || | ||||| | Sbjct 559 GGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 166456 TTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCG 166515 || ||||| | |||||| | |||| |||||||||||||| | || || |||||||||| Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 166516 CTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCT 166575 | ||| ||| | ||||| ||||| || || || || |||| |||||||||||| | Sbjct 679 CACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTAT 738 Query 166576 TCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTT 166635 || | || || | || |||||| | |||||||| ||||||| || ||||| || Sbjct 739 TCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTT 798 Query 166636 TCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACAC 166695 | || || | ||||||||||| ||| || | ||| | || || |||||||||||||| | Sbjct 799 TTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGC 858 Query 166696 TGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCA 166755 | |||||||| || ||||||||||| || ||| || | |||| ||| || | | ||| | Sbjct 859 TTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 918 Query 166756 TCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCA 166815 | || |||| ||| || || ||||| | | | |||| ||||| || || || ||| Sbjct 919 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCC 978 Query 166816 AGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATT 166875 |||||| || | ||||||| |||||||| || || |||||||| |||||||| | | Sbjct 979 GTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCT 1038 Query 166876 GGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGT 166935 ||||||| ||||||||| |||| || || || | ||||| || ||||| ||| | | Sbjct 1039 GGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTAT 1098 Query 166936 TTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 166995 | || || |||| ||| | |||| | || ||| | |||||| | || | ||| Sbjct 1099 TCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACT 1158 Query 166996 TTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAA 167055 | |||||||| ||||| ||||| |||||| | | |||||||| || || ||||| |||| Sbjct 1159 TACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAA 1218 Query 167056 CCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCG 167115 | ||||| || || ||||| || | ||||| ||||| ||| |||||||||| || | Sbjct 1219 CGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 1278 Query 167116 ATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCT 167175 | ||||| ||||| |||| |||||||| ||||| || | ||| | ||||||||||| | Sbjct 1279 ACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTAT 1338 Query 167176 AA 167177 || Sbjct 1339 AA 1340 >seq292 Length=128933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 164957 CTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAA 165016 |||| || || |||||||||| || || | |||||||| || | |||||||||||| Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 165017 CCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCA 165076 | | || |||||||| |||||| |||||||| |||| || || || | |||||| || | Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTA 40673 Query 165077 TC-GGTGT 165083 || ||||| Sbjct 40672 TCAGGTGT 40665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563631898292480