Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3865 641 5e-179 >seq3865 Length=1303 Score = 641 bits (710), Expect = 5e-179 Identities = 717/954 (75%), Gaps = 8/954 (1%) Strand=Plus/Plus Query 169732 GGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT 169791 |||||||| ||||| | ||||| || || ||||| ||||| || | || ||| | Sbjct 322 GGTTGGTTTGGTGTAATCATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATC 381 Query 169792 GCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCA 169851 |||||| | |||||||| || || |||||||| || ||| | ||||| || | ||||| Sbjct 382 GCTTTCGTTGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCT 441 Query 169852 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 169911 || | || |||||||||||||| |||||||| || | || |||| ||||| || ||| Sbjct 442 TTATTATACGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGT 501 Query 169912 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGT 169971 | |||||||| || | |||||||| ||| || |||| |||||||| || ||||||||| Sbjct 502 TTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGT 561 Query 169972 CCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCT-CTGCCTACATGGGTAGACA 170030 ||||| |||||| | | | ||||||| | | || | | ||| |||||||||| | | Sbjct 562 CCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTTGCTG-CTACATGGGTCGTGA 620 Query 170031 GTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCC 170090 |||||| |||| | |||||||||||||||||| |||||| |||||| || ||||| || Sbjct 621 ATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACC 680 Query 170091 AGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGA 170150 ||| |||| || || || |||||| | || ||| ||||||| || || ||||| || Sbjct 681 AGTTGCAGCTGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGA 740 Query 170151 CGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCA 170210 ||| |||||| ||||||| || ||||| || ||||||||| ||||||||||||| || || Sbjct 741 CGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACA 800 Query 170211 CAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACT 170270 |||||| ||||||||||||||||| ||| ||| ||||||||| | || || || | | Sbjct 801 CAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTT 860 Query 170271 CTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAA 170330 ||||| |||||||||||||| | || ||||||||| ||||| | || ||||| || || Sbjct 861 ATTCTCTGCAATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAA 920 Query 170331 CGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGC 170390 ||| ||| ||| ||| ||| ||||| ||||| ||||||||||||||||| || || Sbjct 921 CGAATCAGCTAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGC 980 Query 170391 AGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAG 170450 || || || ||||||||| | | || |||||||| ||| || ||||| |||| Sbjct 981 TGCTCACGGTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTC 1040 Query 170451 TCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTAT 170510 | ||||||||| | ||| | | |||||| | | |||||||| ||| | | ||| | Sbjct 1041 ATTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTT 1100 Query 170511 TTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATC 170570 | || ||||| || |||||||| || || ||||||||||| ||| || | || || Sbjct 1101 ATCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCA---GTTGTTGACTC 1157 Query 170571 T---GGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGA 170627 | ||| ||| | || ||||| ||| | | ||| | || ||| |||||||||| Sbjct 1158 TCAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGA 1217 Query 170628 AGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACTGCTGA 170681 ||||||||| || ||||| || ||||||||||| || ||||| || ||| ||| Sbjct 1218 AGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582818114468800