Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq879 114 8e-21 seq12 111 1e-19 >seq879 Length=48288 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 3998 TCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 3939 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| |||||| Sbjct 3938 ATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 3879 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | || |||||||| || || || ||||| || Sbjct 3878 TCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACG 3819 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3818 AAGATCTGCAT 3808 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| |||||||| || ||||| || Sbjct 2698 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAA 2639 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| |||||| Sbjct 2638 ATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG 2579 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | || ||||| || || || || ||||||||| Sbjct 2578 TCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 2519 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2518 AAGATCTGCAT 2508 >seq12 Length=425388 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | || | || |||| ||| Sbjct 400404 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400463 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 400464 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 400523 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | || | ||| | |||||| || | ||| ||||| || Sbjct 400524 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTG 400583 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| ||||| |||||||| Sbjct 400584 CCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| | || | || |||| ||| Sbjct 400860 ACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400919 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | ||||||||||| Sbjct 400920 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGG 400979 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | || | ||| | ||| || || | ||| ||||| || Sbjct 400980 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTG 401039 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| ||||| |||||||| Sbjct 401040 CCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | || | || |||| ||| Sbjct 401784 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTCC 401843 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 401844 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 401903 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | || | ||| | ||| || || | || ||||| || Sbjct 401904 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTG 401963 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||||||||| Sbjct 401964 CCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| | || | || |||| ||| Sbjct 400632 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCC 400691 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 400692 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 400751 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | || | ||| | ||| || || | ||| ||||| || Sbjct 400752 ATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTG 400811 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || || |||||||| Sbjct 400812 CCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| || || | || | || |||| ||| Sbjct 401088 ACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCCTCC 401147 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||||||| | || | ||||||||||| Sbjct 401148 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 401207 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| |||||| | || | ||| | ||| || || | || ||||| || Sbjct 401208 ATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTG 401267 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || || |||||||| Sbjct 401268 CCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324617370551856