Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3865 675 0.0 >seq3865 Length=1303 Score = 675 bits (748), Expect = 0.0 Identities = 739/975 (76%), Gaps = 8/975 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || ||||||||||||||||| ||||||||||| | ||||| || | Sbjct 1250 GGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATG 1191 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | ||||| ||| || |||| || |||||||| Sbjct 1190 ATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACAACTGATTGGTTGAAGTTG 1131 Query 84105 AATCCATTCAGATTAAATGCCATGGT-GCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 || || || || || || ||||| || | ||| ||| | ||||| ||||| || || | Sbjct 1130 AAACCGTTAAGGTTGAAAGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAGATACCGAT 1072 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| ||||| ||||| | |||||| |||||||| ||||| || || Sbjct 1071 TACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATTG 1012 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 ||| || | |||||| ||||| ||||||||||| || || || || ||||| || ||||| Sbjct 1011 GAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATGTTGTATGTTTCTTCCTCTTG 952 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||| ||||||| ||| ||| | ||||| || ||||| ||||||| |||||| Sbjct 951 ACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCACGGATTAAAGAAGA 892 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || || | ||||| |||||||||||||||| || ||||| || ||||||||||| || Sbjct 891 TGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCACCAAAAACACCAGCAACACC 832 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTT 84463 |||||||| || || |||||||||||||| ||||| || ||||| || | |||| |||| Sbjct 831 TAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAATACGATCATGAAGTT 772 Query 84464 GAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATA 84523 ||| || || || ||||| | ||||| || |||||||| |||||||| |||| ||| || Sbjct 771 GAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAATGAACCTTGACCGATAGGGTA 712 Query 84524 CACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGG 84583 | | ||| || |||| || ||||||||||| ||||||||||| ||| ||||||||| Sbjct 711 GATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGCGATCCATGG 652 Query 84584 ACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTA--AGCAAATGCACCA 84641 ||||||||| | ||| | || | ||||||||||||||||||||| |||||| |||| Sbjct 651 ACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAGCAGCAAA--CACCT 594 Query 84642 ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATA 84701 | | |||||| | || | | ||| ||||| ||||| || |||| ||| ||||| | | Sbjct 593 AATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCGTCTAAA 534 Query 84702 CTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACG 84761 ||| |||||||| | || ||||| |||| ||||||||| ||||| | || | ||| Sbjct 533 GATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTAGGGATTACA 474 Query 84762 GCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCG 84821 |||||||||||||||||||| ||||| | | |||||||| ||||| |||||||||||| Sbjct 473 GCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGAAACTGGTTCACGGATACCG 414 Query 84822 TCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAG 84880 || || |||||||| || || ||||||| || |||||||| ||||| || || | | Sbjct 413 TCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAATACAGA-TGTTGCTGTTAA 355 Query 84881 TAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGT 84940 || |||||||| | ||||||||||| | || | |||||| | ||| || || Sbjct 354 TAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAAACGGTTTTCAGTAGAAGT 295 Query 84941 GACCCAATCACAGAA 84955 | ||| |||||||| Sbjct 294 AATCCACTCACAGAA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571244307946160