Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3865 556 4e-154 seq292 82.4 2e-11 >seq3865 Length=1303 Score = 556 bits (616), Expect = 4e-154 Identities = 724/996 (73%), Gaps = 4/996 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| ||| |||| ||| || ||||||||||| |||||||| || ||||| |||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 ||||||| |||||||| | |||||||||||||| | || | || | || ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || ||||| || |||||||| || ||||| || || ||||||||||| || | || | | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || || | ||| || | | || ||||||||||| | |||||| ||||| || Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || ||| || ||||| || | | |||||||| || ||||| || || ||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 || || || ||||| ||||| ||||| || ||| ||| ||||| ||||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 |||||||| || | || || ||||| | | |||||||| |||| |||||||| ||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 || || || || |||||||| | ||| ||||| || ||||||||||| |||||||| || Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || || | ||| || |||||||| || |||||||| | ||||||||| |||||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 ||||| || | |||||||| |||||| || ||| || |||||||| || || || Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 ||||||||| ||||| || | |||||||| | || | |||||||| || ||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 36624 AAGTAAGCTG-AGATACC-AATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 36681 | ||| || | | | ||| ||| |||| |||| | || || | ||| || || || |||| Sbjct 611 ATGTA-GCAGCAAACACCTAATAAGAA-GTGGCAAACGATTAATTGGTAAGGACCACCGT 554 Query 36682 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 36741 | |||||||||||||| | | |||||||||||| | |||||||||||| | ||| || | Sbjct 553 TGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAG 494 Query 36742 CGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTG 36801 |||| || | |||| | || ||||| ||||||||||| || || | ||| | || | Sbjct 493 CGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAG 434 Query 36802 AGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAA 36861 | || || ||||| ||||| || || || || ||||| || ||||| || || || | | Sbjct 433 AAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGA 374 Query 36862 ATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGA 36921 || | | ||||||||| | ||| ||||| | ||| |||||||| || | || | Sbjct 373 ATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATA 314 Query 36922 GGCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 ||||| | ||| |||| ||| ||||| |||| Sbjct 313 AACGGTTTTCAGTAGAAGTAATCCACTCACAGAAAC 278 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 |||||| |||| | | ||| | || || | ||| |||||||| ||||| | | |||| Sbjct 40677 AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAAGATGCA 40736 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGAC 36757 |||||||| | |||||||||||| | ||| || ||||| || | |||||| Sbjct 40737 GCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGAC 40786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150447071178108