Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3865 572 5e-159 >seq3865 Length=1303 Score = 572 bits (634), Expect = 5e-159 Identities = 731/997 (73%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| |||| || || ||||||||||| || || ||||||||||||||||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 || | ||| |||||||| | || || ||||||||| | | | ||| ||||||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || ||||| || |||||||| || |||||||| || ||||||||||| || | || | | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | || | ||| || | | || ||||||| ||| | |||||| ||||| ||| Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || ||| || ||||| || | | |||||||| || ||||| || || ||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543 || || |||||||||||||| ||||| || ||| ||| |||| || | || Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTC--AG 914 Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603 |||||||||| || | ||||| ||||| | | || ||||| |||| ||| |||| | Sbjct 913 TTGTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAAC 854 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 |||| || || ||||||||||| | ||||||||| || ||||||||||| |||||||| | Sbjct 853 CACCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAG 794 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||||| ||| ||||| ||||||||||| ||||| | ||||||||| ||| || Sbjct 793 CTTGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGA 734 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCT 5782 | || || |||| |||||| | ||| || |||| |||| || || ||||| ||||| Sbjct 733 ATGAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTA-GCAGCTGCAACTGGTGCA 675 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 || || ||||| |||||||| ||||| ||||| | | || | |||||||| || Sbjct 674 GAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGA 615 Query 5843 CCCAAGTAAGCTGC-GATACC-AATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTC 5900 |||| || ||| || | ||| ||||| ||||||| | |||| | |||||| || || | Sbjct 614 CCCATGT-AGCAGCAAACACCTAATAA-GAAGTGGCAAACGATTAATTGGTAAGGACCAC 557 Query 5901 CATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAA 5960 | ||||| | ||| || || | | || |||||||| | || ||||||||||| |||| Sbjct 556 CGTTGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAA 497 Query 5961 TTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATC 6020 | ||||| || | || | || || || || ||||||||||| || || | || ||| | Sbjct 496 TAGCGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAAC 437 Query 6021 CTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATA 6080 | | || |||||||| || ||||||||||| ||||| || || || ||||| || | | Sbjct 436 CAGAAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGA 377 Query 6081 TAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACAT 6140 | ||| ||| ||||| ||||| | || ||||| | ||||||||||| || | | Sbjct 376 TGAATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGT 317 Query 6141 AGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | | ||||| | || ||||| ||| |||||||| Sbjct 316 ATAAACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152642164247172