Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3865 562 9e-156 seq292 82.4 2e-11 >seq3865 Length=1303 Score = 562 bits (622), Expect = 9e-156 Identities = 723/995 (73%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| |||| |||||||| |||||||||||||| |||||||| || ||||| |||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 ||||||| |||||||| | |||||||||||||| | || | || | || ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || ||||| || |||||||| || ||||| || || ||||||||||| || | || | | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 || || | ||| || | | || ||||||||||| | |||||| ||||| ||| Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || ||| || ||||| || | | |||||||| || ||||| || || ||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 || || || ||||| ||||| ||||| || ||| ||| ||||| ||||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 |||||||| || | || || ||||| | | |||||||| |||| |||||||| ||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 || || || || |||||||| | ||| ||||| || ||||||||||| |||||||| || Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || || | ||| || |||||||| || |||||||| | ||||||||| |||||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 ||||| || | |||||||| |||||| || ||| || |||||||| || || || Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 ||||||||| ||||| || | ||| |||| | || | |||||||| || ||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 26104 AAGTAAGCTG-AGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTT 26162 | || ||| | | | || | | |||||| | || || | ||| || || |||||||| Sbjct 611 ATGT-AGCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTT 553 Query 26163 ATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 || ||||||||||| | | |||||||||||| | |||||||||||| | ||| || || Sbjct 552 GTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGC 493 Query 26223 GTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGA 26282 |||||| | |||| | || || || ||||||||||| || || | ||| | || || Sbjct 492 GTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGA 433 Query 26283 GACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAA 26342 || || ||||| ||||| || || || || ||||| || ||||| || || || | || Sbjct 432 AACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAA 373 Query 26343 TGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAG 26402 | | | ||||||||| | ||| ||||| | ||| |||||||| || | || | Sbjct 372 TACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAA 313 Query 26403 GCGGTTGTTTGTACTTGTAACCCAGTCACATAAAC 26437 ||||| | ||| |||| ||| ||||| |||| Sbjct 312 ACGGTTTTCAGTAGAAGTAATCCACTCACAGAAAC 278 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 |||||| |||| | | ||| | || |||| ||| || ||||| ||||| | | |||| Sbjct 40677 AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAAGATGCA 40736 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGAC 26237 |||||||| | |||||||||||| | ||| || |||||||| | ||||| Sbjct 40737 GCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGAC 40786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151986196201752