Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3865 726 0.0 >seq3865 Length=1303 Score = 726 bits (804), Expect = 0.0 Identities = 739/957 (77%), Gaps = 10/957 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||||||||| ||||| | ||||| |||||||| | ||||| || || ||||||| Sbjct 320 TCGGTTGGTTTGGTGTAATCATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCA 379 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||| ||||||| ||||||||||| ||||| |||||| | ||||| ||| | |||| Sbjct 380 TCGCTTTCGTTGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTT 439 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | | || |||||||||||||| ||||||||||| | |||| ||| || ||||||| Sbjct 440 CTTTATTATACGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTG 499 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | |||||||| || | |||||||| ||| || | || |||||||| || || |||| Sbjct 500 GTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTG 559 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA-CAGCATACTGTGGTCGT 162837 | |||| |||| | | || | ||||||| | | || | | || ||| |||||| Sbjct 560 GTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGT 618 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 | |||||| | |||| ||| |||||||||||||| |||||| ||| || ||||||||| Sbjct 619 GAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCA 678 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 ||||| | || || || || ||||| |||| ||| ||||||||||||| |||||| Sbjct 679 CCAGTTGCAGCTGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCT 738 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 |||| |||||| | ||||||||||||||||| |||| |||| |||| |||||||| || Sbjct 739 GACGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAA 798 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 ||||||||||| |||||||| ||||| ||| | || || || ||||| || |||||||| Sbjct 799 CACAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCT 858 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 | || ||| |||||||||||| | ||||| |||||| | ||| | ||||| ||||| Sbjct 859 TTATTCTCTGCAATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAA 918 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || ||| ||| ||||| ||||| ||||| ||||| || |||||||| || Sbjct 919 AACGAATCAGCTAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTA 978 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 |||||||| || ||||||||||| || || ||||| || || || ||||||||||| ||| Sbjct 979 GCTGCTCACGGTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGT 1038 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 ||| | ||||||||| | ||||| | ||||| || | |||||||||||||| | ||| Sbjct 1039 TCATTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT 1098 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC- 163376 | ||||||||||| |||||||||||||||||||||||||||||||| || |||||| | Sbjct 1099 TTATCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCT 1158 Query 163377 --AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTAT 163433 |||| || || | |||||||| || ||| | ||| | || |||| ||||| Sbjct 1159 CAAGGTCGT---GTATTAAACACTTGGGCTGACATCATCAACCGTGC-TAACTTAGGTAT 1214 Query 163434 GGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||| |||||||| ||||| || ||||||||||| || ||| | ||| ||| ||| Sbjct 1215 GGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553056440576880