Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3865 702 0.0 seq2255 544 9e-150 >seq3865 Length=1303 Score = 702 bits (778), Expect = 0.0 Identities = 756/995 (76%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || || ||||| ||||| |||||||| || || ||||||| | | || || |||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 163190 TCTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATAT 163248 | | |||||| | | || | | ||| || ||||| |||||||||||| | || | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 163249 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 163308 || ||||||||||| || |||||| |||||| ||||||||||| |||||||| || | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 163309 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 163368 ||||| ||| | |||| ||| ||||||||||||| |||||||||| ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 || ||||| || ||||||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || ||||| ||||| || || |||||||| || ||||| || | ||||| |||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTAT 163548 || | | ||||| ||||| | ||||||| || ||||||| || ||| ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 163608 |||||| || |||||||| ||||| |||||||||||||| || || || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTG 163668 |||||||| || |||||||| || |||||||||||| | | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || |||||||| |||| |||||||| ||||| | || || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 ||||| |||||||||||||||||||| || | |||| ||| |||||||| | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 163848 |||||||| ||| | | ||||| ||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 163849 GCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 || ||||||||||| || || | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 544 bits (602), Expect = 9e-150 Identities = 723/994 (73%), Gaps = 10/994 (1%) Strand=Plus/Plus Query 164636 AGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGC 164695 ||| || || || || || || ||||| |||||| |||| | || |||||| | || Sbjct 353 AGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATTACCATGTGCTTACTTCGC 412 Query 164696 CATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGC 164755 | || |||||| | ||||| || ||||||| || ||||||||| || || | || Sbjct 413 AGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTGGTACACACACGGCTTAGC 472 Query 164756 TTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGC 164815 | |||| || | |||||| |||||| | || || ||||| || || || || || Sbjct 473 TACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGTTTCTACACCAGCAAATAG 532 Query 164816 TATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTC-AGGGGAATTTCCAGCGG 164873 |||| ||| ||| || || | ||| ||||||||||| ||| ||| || ||| || || Sbjct 533 CATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTCAAGGTGACTTTACA-CGT 590 Query 164874 TGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATT 164933 ||||| |||||||| || ||||| ||| | ||| | |||||| | || | ||||| Sbjct 591 TGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGGTTCATTTGGTTTAATT 650 Query 164934 GGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCA-TTGGTATCCGTCCTTACAATGC 164992 ||||||||| | || || ||||| | |||||| ||| || | ||||| ||||| || Sbjct 651 GGTTTCATGTTACGTCAATTTGAAATCGCACGT-TCAGTTAACTTACGTCCATACAACGC 709 Query 164993 TATTGCGTTCTCTGGTCCTATTGCTGTTTT--TGTCAGCGTCTTCCTTATCTACCCACTG 165050 |||||| ||||||| |||||||||||| || ||| || ||| | || ||||| | Sbjct 710 TATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCA--GTTTTCTTAATTTACCCTTTA 767 Query 165051 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 165110 ||||| || ||||||| || ||||| ||||| || || |||||||| | ||| | Sbjct 768 GGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATC 827 Query 165111 TTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCA 165170 || ||| | || || |||||||||||||| || ||||| ||||| |||||||||||||| Sbjct 828 TTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACATGATGGGTGTTGCT 887 Query 165171 GGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTA 165230 ||| | || || | || || ||| ||||||||| || | || |||||||| |||||| Sbjct 888 GGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTA 947 Query 165231 TACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 165290 | || || || || || || || || || || | | || || | |||||| Sbjct 948 TTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAA 1007 Query 165291 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCT 165350 || || |||||||| ||||||||||| |||||||| || |||||||| |||| || || Sbjct 1008 ACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCA 1067 Query 165351 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 165410 ||||| || ||| | || || |||||||| || || || |||| ||| | |||| || Sbjct 1068 AACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCA 1127 Query 165411 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAG 165470 ||||||| | |||||| | || | ||| | ||||||||||| ||||| || || Sbjct 1128 GCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAA 1187 Query 165471 ATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAAT 165530 || | ||||||||||| ||||| || || || |||||||| ||||||||||| | ||| Sbjct 1188 ATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAAT 1247 Query 165531 GAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCA 165590 ||||| | ||||||||| |||| || || ||||| |||||| || | |||||| Sbjct 1248 GAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCA 1307 Query 165591 GAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 ||||||||||| ||| | || ||||| || |||| Sbjct 1308 GAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563180721427760