Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1341 143 5e-29 seq2 116 7e-21 >seq1341 Length=23566 Score = 143 bits (158), Expect = 5e-29 Identities = 188/260 (72%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| |||||||||||| | ||||| ||| ||||| || ||||||| |||||||| Sbjct 13782 TATAGCAAGCAGGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAG 13841 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| || || ||||||| || | || ||||||||||| || | ||| ||||| Sbjct 13842 AAGGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCG 13901 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||||||| || ||||| ||||| || | ||| |||| | || Sbjct 13902 CTGAAGAAGATGCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAGCACTCG--- 13958 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| | | |||||| |||||||| | ||||| ||||||||| || || || || Sbjct 13959 TTGCCGGTGATCCACTTGAGCGCCCACTGCGCCTTGCGCTTGATGCAGGGGATGGTGTCG 14018 Query 48362 ATGGCCCGGAAGAGCTTCTT 48381 |||| |||||||||| || Sbjct 14019 ATGGAGTGGAAGAGCTTATT 14038 >seq2 Length=533353 Score = 116 bits (128), Expect = 7e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| |||||||| |||||||||||| ||| |||||||||||||||||| ||| Sbjct 427782 GTGTACTCGATGATCTCTGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 427841 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||||| |||||| ||||||||||||||| ||||| |||||||| | ||| Sbjct 427842 TTGGACTTGCGGTTGGCGCTGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCCACCTGC 427901 Query 213648 GACACCA 213654 | | ||| Sbjct 427902 GCCTCCA 427908 Score = 107 bits (118), Expect = 4e-18 Identities = 123/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| ||||| |||| |||||||||| ||| ||||| | | | | ||| || Sbjct 428612 CTCCATGAATAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTC 428671 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || ||| |||||||| || || |||||||| | ||| | |||||| ||||| || Sbjct 428672 CTTGCCGTGGTTCTTGCGCAGGTCGAGGAAGTCAAACACGTCAGAGTGCCAGGGCTCAAT 428731 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGCCG---CCCTGGTCCAC 213979 ||| ||||| || |||||| | ||||||| ||||||||||| Sbjct 428732 GTACATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 428776 Score = 102 bits (112), Expect = 2e-16 Identities = 182/262 (69%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||| | || ||||||||| || || ||||| |||||||| || |||||| Sbjct 426049 GTGTATGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGGCTGGTGCTGGCGGTAGGCATG 426108 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAG-GCGCCGAAGCTCTGC 213079 || |||||||| || ||| | ||| |||||| | ||||| |||| | || | || Sbjct 426109 GGCGCCACCAGCAGCGAGTTGCGCACACCGTGCGCCGCGATGTCTGCGCGCAGGCGC-GC 426167 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGAT 213139 |||||| |||| |||| | | | | ||| ||||||||| ||||| | Sbjct 426168 CCAGTCGAGCTTGCCGTCCAGGCCGGAGGGCGTGACGGCCCACATGTCGGGCTGCAGCAC 426227 Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||| ||||| ||||||||||| |||| | |||||||| | | | ||||| || Sbjct 426228 GCCCTTGCTGACGGGGCTGCCGGGGTAGGTCTCATAGGGGCCCTCCACAGCTGCCAGGTC 426287 Query 213200 GCAGGACG-CCTGCAGGGCAGC 213220 | | || | ||||||| | ||| Sbjct 426288 GGACGAGGCCCTGCAGAGGAGC 426309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931485035655680