Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1341 183 6e-41 seq2 114 2e-20 >seq1341 Length=23566 Score = 183 bits (202), Expect = 6e-41 Identities = 193/250 (77%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 25796 CCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACA 25855 ||||||| ||| ||| |||||||| | ||||||| |||||| | |||||||||| | Sbjct 14022 CCATCGACACCATCCCCTGCATCAAGCGCAAGGCGCAGTGGGCGCTCAAGTGGATCACCG 13963 Query 25856 GCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 || | ||| ||| || |||||| ||||| || ||||| || || ||||||||||| Sbjct 13962 GCAACGAGTGCTTCGC----CGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCTTC 13907 Query 25915 TTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCT 25973 |||||||| ||||| ||| ||||||||||||||||| || || |||||||||||| Sbjct 13906 TTCAGCGGCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCT 13848 Query 25974 GTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 ||| ||||||||||||||| | |||||||| | ||| | || ||||||||| | Sbjct 13847 TACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGCCTGCTT 13788 Query 26034 GCTCTACACG 26043 ||| |||||| Sbjct 13787 GCTATACACG 13778 >seq2 Length=533353 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 221746 GGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTG 221805 ||| |||| ||||||||||| || |||||| |||||||||||| ||||||| | || Sbjct 427781 GGTGTACTCGATGATCTCTGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTG 427840 Query 221806 ATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTG 221865 || |||||||| ||||| ||||||||||||||| ||||| ||| ||||||| ||| Sbjct 427841 GTTGGACTTGCGGTTGGCGCTGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCCACCTG 427900 Query 221866 AGCCACCA 221873 ||| ||| Sbjct 427901 CGCCTCCA 427908 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| ||||| |||||||||||||| | ||||| || | | ||| |||||| Sbjct 428612 CTCCATGAATAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTC 428671 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||||| ||| || | ||| || | || ||||| | ||||| |||||| ||||| | Sbjct 428672 CTTGCCGTGGTTCTTGCGCAGGTCGAGGAAGTCAAACACGTCAGAGTGCCAGGGCTCAAT 428731 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | ||| | ||||| |||||| ||| ||||| ||||| Sbjct 428732 GTACATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 428776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928797173482880