Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq3865 702 0.0 seq2255 480 8e-131 seq292 82.4 8e-11 >seq3865 Length=1303 Score = 702 bits (778), Expect = 0.0 Identities = 754/995 (76%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 ||| || || ||| | ||||| || | || || || || |||| |||||||| || | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||| || | | | | || ||| | ||||| | ||| |||||||| ||||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 ||| || ||||||||||| ||||| ||||||||| |||| ||| | | ||||||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 |||||| |||||||| || | || | |||||||| ||||| | ||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| || ||| | || |||||| | |||||||||||||||||||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCT--TATATGGGTCGTGAATGGGAACTTTCTTAC 8604 || ||||||| | | | || |||||| || |||||||||||||||||| | |||| | Sbjct 579 TTGCCACTTCTTATTAG--GTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 8605 CGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCT 8664 || | || |||||||| |||||| ||| || |||||||| || ||||| |||||| || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 8665 GCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGT 8724 || || ||| | |||| ||| | ||||||||||| |||||||| ||||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 8725 ATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCAC 8784 || || ||||| ||||||| ||| | || ||||| ||||| ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 8785 CCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCAT 8844 || ||||||||| | |||||||||||||| || || || ||| | || || |||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 8845 GGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTAT 8904 ||||| | ||||| ||||| | | ||||| || || |||| ||| || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 8905 GGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTT 8964 || ||| ||||||||||| || ||||| |||||||| || || ||||| || |||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 8965 GGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTC 9024 ||||| || || |||||||| || || || ||||| ||| | || || |||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 9025 GCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTC 9084 ||||| |||||||| | || |||||||| || || | || | || || ||||||||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 9085 AACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAAC 9144 ||||| || || |||||||||||||| || || | ||| ||||| || || | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 9145 ACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAAC 9204 || ||||| ||| | | ||||| || | ||||||||||| ||||||||| | ||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 9205 GCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 || ||||||||||| || ||| | || ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 480 bits (532), Expect = 8e-131 Identities = 717/1013 (71%), Gaps = 6/1013 (1%) Strand=Plus/Plus Query 9826 TGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTT 9885 ||| |||||| | | ||| || || || || || |||||||| ||| || | || || Sbjct 335 TGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATT 394 Query 9886 TCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTG 9945 || |||||| | ||| | ||||| ||| | ||||| ||||| ||||| || ||| Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 9946 GTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGT 10005 |||||| ||||| | || | | |||| | || ||| ||| ||| | || || ||||| Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 10006 CTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTC 10064 || || || || || |||| ||| ||| || || | ||| ||||||||||| ||| Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTC 573 Query 10065 AGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 10124 | || || || || ||| || ||||| || | ||||||||| | || | |||| Sbjct 574 AAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACG 633 Query 10125 GAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAA 10184 | | || | |||||| || || |||||||| || ||||| | || | | | || Sbjct 634 GTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACT 693 Query 10185 TCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTT--TGTCAGTGTTTT 10242 | || || ||||| ||||| || || |||| ||||||||||| || ||| ||||| Sbjct 694 TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCA--GTTTT 751 Query 10243 CCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGC 10302 | | || || || | || || || ||||||||||||| || ||||| || || || || Sbjct 752 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGC 811 Query 10303 GATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCA 10362 || ||||| ||| | | ||| ||||||| || || || |||||||| || || ||||| Sbjct 812 AATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCA 871 Query 10363 TATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCAC 10422 |||||||| ||||||||| | | || | || | ||| || || ||||| | || Sbjct 872 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTAC 931 Query 10423 TGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAG 10482 ||| ||||||||| | | | |||| || || || ||||| ||| || || | Sbjct 932 TGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCC 991 Query 10483 CACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATT 10542 ||||||| |||||| || || || ||||||||||| |||||||||||||| || || || Sbjct 992 AACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTT 1051 Query 10543 TGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTAT 10602 || ||||||| || ||||| ||| | || ||||| ||| | || ||||| |||| Sbjct 1052 CGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTAC 1111 Query 10603 GGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 10662 ||| | |||| || ||||||| | |||||| | || | || | ||||||||||| Sbjct 1112 TGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTACGA 1171 Query 10663 TTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAA 10722 || || || ||||| || | || ||||||| || || || || |||||||| || || Sbjct 1172 CTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAA 1231 Query 10723 GAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGA 10782 || |||||||| || |||||| ||||||| |||||||| | |||||||| || || Sbjct 1232 AAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGA 1291 Query 10783 AAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGATATT 10835 | | || || |||||||||||||| | ||| | ||||| || || | || || Sbjct 1292 ACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAATTTT 1344 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 8448 TCCCAGCT-CTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTG 8506 ||||| || ||||||| ||||| | ||||||||||| | |||||||| || ||| | | Sbjct 40785 TCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAG 40726 Query 8507 ATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTC 8556 | || ||| | |||||| |||||||| |||| | || || | ||||||| Sbjct 40725 ACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516453517488000