Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq3865 747 0.0 seq2255 544 9e-150 seq292 102 9e-17 >seq3865 Length=1303 Score = 747 bits (828), Expect = 0.0 Identities = 753/974 (77%), Gaps = 6/974 (1%) Strand=Plus/Plus Query 160897 ACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTGCTCGCT 160956 || || ||||| | || | |||||||| || || | |||||||| ||||| | | Sbjct 301 ACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATCATGATTCCTTGCTTATTAACA 360 Query 160957 GCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCAT 161015 || || || ||| |||||||| || ||||||| ||||| || || ||||||||||| || Sbjct 361 GCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCCTCCAGTTGACATCGACGGTAT 419 Query 161016 TCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTAT 161075 |||||||| || ||||||| | | || || ||||||||||| ||||||||||| || Sbjct 420 CCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATTTCTGGTGCTGTAAT 479 Query 161076 CCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGA 161135 |||| ||||||||||||| ||| | ||||||||||| | |||||||| ||| | | || Sbjct 480 CCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGA 539 Query 161136 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCAT 161195 ||| ||| | |||||||||||||||| |||| | | || | ||||||| | | || | Sbjct 540 CGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGG--T 597 Query 161196 CTATGCT--TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGG 161253 | |||| |||||||||||||| |||||| | |||| |||| | || |||||||| ||| Sbjct 598 GTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGG 657 Query 161254 ATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCT 161313 || ||||| |||||||| || || || || || | |||||| ||| | |||| ||| Sbjct 658 ATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCAGTTTTCTTAATCTACCCT 717 Query 161314 TTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTAC 161373 ||||||||||||| |||||||| | |||||| | || || |||||||| ||||||| | Sbjct 718 ATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTC 777 Query 161374 ATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTA 161433 ||| | || |||||||| || |||||||| || |||||||| ||||| ||| | || || Sbjct 778 ATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCCATTCCACATGTTAGGTGTT 837 Query 161434 GCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCG 161493 || ||||| ||||| |||||| | ||| ||||||||||||||| | ||||| ||||| Sbjct 838 GCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGGTTCTTTAGTTACATCTTCT 897 Query 161494 CTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 161553 | | |||||||| || |||||||| || ||| ||||||| ||||||||||| Sbjct 898 TTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGGTTACCGTTTCGGTCAAGAG 957 Query 161554 GAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATAC 161613 ||||| || ||||||||||| ||||| ||||| ||||| |||||| | |||||||||||| Sbjct 958 GAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGGTCGTTTAATTTTCCAATAC 1017 Query 161614 GCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGC 161673 ||||| ||||||||||| || || | ||||||||| | |||||||||||||| | || Sbjct 1018 GCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGT 1077 Query 161674 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTC 161733 |||||||||||||| | || || || ||||| |||||||| || |||||||||||| Sbjct 1078 ATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAACCTTAACGGTTTCAACTTC 1137 Query 161734 AACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAAC 161793 ||||| || | ||||| ||| ||| || | ||||| ||||| ||| | ||||| Sbjct 1138 AACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAAC 1197 Query 161794 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGAC 161853 |||||| | || |||||||| |||||||| || || || |||||||||||||| ||| Sbjct 1198 CGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGAC 1257 Query 161854 CTTGCTGCTGCTGA 161867 | ||| ||| ||| Sbjct 1258 TTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 544 bits (602), Expect = 9e-150 Identities = 738/1025 (72%), Gaps = 8/1025 (1%) Strand=Plus/Plus Query 162114 TGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 162173 ||||| |||| | |||||||||| | |||||||||||| || || || ||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 162174 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 162233 ||| | | || || || |||||| | || | || |||||| | ||||| |||||| Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 162234 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 162293 || || || |||||| || ||||| | || | ||| || | || ||| ||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 162294 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT-ATG 162352 | ||||| || |||||||| |||||| | |||| ||| ||| || | |||| ||| Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 162353 GGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTT 162412 ||||||||| ||||||| ||||| | || ||||| |||||||| || | ||| |||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 162413 TGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGC 162472 | | || | ||||| | |||| | || ||||||||| | || || |||||| | || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 162473 ACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529 ||| | ||| | | ||||| ||||| |||||||| ||||| | |||||||||||| Sbjct 680 ACGTTCAGTTAACT---TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589 |||| | ||||| | || || ||||| || ||||| |||||||| || || Sbjct 737 ATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 162649 || || || || ||||||||||| ||| | | ||| |||| |||||||| |||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 162650 GCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGC 162709 ||| || || || ||||||||||| || || ||| | | |||| ||| || | | ||| Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 162710 TATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTT 162769 |||||| || | || |||||||| ||| | | ||||| || || || ||||| || Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 162770 TAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTT 162829 ||||| || | || || | |||||||| || || ||||||||||| ||||| || Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 162830 CTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCT 162889 |||||| || || |||||| ||||||| ||||| |||||||| || ||||| ||| | Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 162890 CTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAA 162949 || || || || | ||| | |||| |||| ||| | ||||| | || | || Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 162950 TCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGA 163009 | |||||||||||||| || || |||||| ||||||| ||||||||||| ||||| || Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 163010 GACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGT 163069 |||||||| || || ||||| ||||| |||||||| |||| || ||| | || | Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 163070 GGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||||| || || ||||| ||||| || || || | || |||||||| Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Query 163130 ATGAT 163134 || || Sbjct 1337 ATAAT 1341 >seq292 Length=128933 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 161069 CTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAA 161128 |||| |||| ||||||||||||| ||| | ||||||||||| | |||||||| ||| Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 161129 GTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTC 161184 | | ||||||||| | |||||| |||||||| |||| | || |||| ||||||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547719114262320