Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3865 527 2e-145 seq292 82.4 2e-11 >seq3865 Length=1303 Score = 527 bits (584), Expect = 2e-145 Identities = 714/990 (72%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 |||||||| ||||| |||||||| || || ||||| |||||||| ||||| | || | | Sbjct 1265 GAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAG 1206 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||||| | ||||| | ||||||||| || || || | ||| || | |||| Sbjct 1205 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACAACT 1146 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||||||||| || || || || ||||||||||| || | || | || || Sbjct 1145 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAAGCAGTG 1086 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | | || ||||||||||| |||||||| |||| | ||||| Sbjct 1085 AACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 1026 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || ||| || ||||| || | | |||||||| || ||||| || || || || || Sbjct 1025 AATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATGTTGTAT 966 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||| ||||| || || || ||| ||| || || ||||| ||||| Sbjct 965 GTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCA 906 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 | || | || || ||||| | | |||||||| |||| |||||||| ||||| || Sbjct 905 CGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCACCAAAA 846 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || |||||||| | ||| ||||| || ||||||||||| |||||||| ||||||||| Sbjct 845 ACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAAT 786 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 |||| |||||| ||||||||||| |||||| | ||||||||| |||||||| ||| Sbjct 785 ACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAATGAACCT 726 Query 18372 TGTCCAAAAGGATAAACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 || || | ||| || | | || |||| || | |||||||| |||||||| || ||||| Sbjct 725 TGACCGATAGGGTAGATTAAGAAAACTGCAGTA-GCAGCTGCAACTGGTGCAGAGTAAGC 667 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 ||| ||||| || |||||||||| | || | |||||||| || ||||||| Sbjct 666 TACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGT- 608 Query 18491 AGCTGC-GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 18549 ||| || | || | | |||||| | || || | ||| || || || ||||| |||| Sbjct 607 AGCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 548 Query 18550 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 18609 |||||||||| | | |||||||||||| | |||||||||||| | ||| || ||||||| Sbjct 547 ACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAG 488 Query 18610 ATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAG 18669 | | |||| | || || || ||||||||||| || || | ||| | || || || | Sbjct 487 AAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 428 Query 18670 GCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTG 18729 | ||||| ||||| || |||||||| |||||||| ||||| || || || | ||| | | Sbjct 427 GTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAATACAG 368 Query 18730 TAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGT 18789 | ||| ||||| | ||| ||||| | ||| |||||||| || | ||| | |||| Sbjct 367 ATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAAACGGT 308 Query 18790 TGTTTGTACTCGTAACCCAGTCACATAAAC 18819 | | ||| |||| ||| ||||| |||| Sbjct 307 TTTCAGTAGAAGTAATCCACTCACAGAAAC 278 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 |||||| |||| | | ||| | || || | ||| |||||||| ||||| | | |||| Sbjct 40677 AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAAGATGCA 40736 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGAC 18619 |||||||| | |||||||||||| | ||| || |||||||| | ||||| Sbjct 40737 GCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGAC 40786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151311029091588