Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3865 679 0.0 seq2255 547 8e-151 >seq3865 Length=1303 Score = 679 bits (752), Expect = 0.0 Identities = 744/991 (75%), Gaps = 6/991 (1%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||| ||| | ||| || ||||||||||| |||||||| |||||||| ||||||||||| | Sbjct 1267 CAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTA 1208 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 ||| ||||||| | ||| ||||| ||||| || |||||||| ||| |||| | Sbjct 1207 AGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACAA 1148 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGT-GCTAACACCAAGTGCG 103348 || |||||||||||||| ||||| |||||||| ||||| || | ||| ||| | || Sbjct 1147 CTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAA-ACCTAAAGCA 1089 Query 103349 GTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTG 103408 |||||||||||||| | ||| || | |||||| Sbjct 1088 GTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTG 1029 Query 103409 TTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTG 103468 |||||||| ||||||||||| || |||||||| |||||||| ||||| |||||||||||| Sbjct 1028 TTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATGTTG 969 Query 103469 TATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTC 103528 ||||| ||||||||||| ||||| ||||||| ||| ||||| ||||||| || Sbjct 968 TATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTT 909 Query 103529 TCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 ||||| | | || || ||||| | ||||||||||| ||| ||| | |||||||| Sbjct 908 TCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCACCA 849 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || |||||||| || | ||||||||| |||||||| || ||||| ||||| |||||| Sbjct 848 AAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGG 789 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | |||| ||||||| || || |||||||| ||||||||| | || ||||| ||| Sbjct 788 AATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAATGAA 729 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||| | ||||||| ||||| ||||| | ||||| ||||| || |||||||| Sbjct 728 CCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAGTAA 669 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| |||||| || ||||| || | |||| | || |||||||| ||||| ||||| Sbjct 668 GCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATG 609 Query 103829 TATGCA-TAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATA 103887 || ||| | | || | | ||||||| | || | | |||| ||||||||||||| || Sbjct 608 TA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTA 550 Query 103888 CAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTT 103947 | |||||| || | |||||| |||||||| | || |||||||| | |||||| ||||| Sbjct 549 TAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTT 490 Query 103948 GGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGAC 104007 || | || | || |||||||| ||||||||||||||||| | | ||||||| || Sbjct 489 AGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGAAAC 430 Query 104008 GGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GC 104066 |||||||| || |||||||| || || ||||| ||||| |||||||| | |||||| | Sbjct 429 TGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAATAC 370 Query 104067 AGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGAC 104126 |||| ||||| | || | || ||||| | ||||| |||||||| | || | || Sbjct 369 AGAT-GTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAAAC 311 Query 104127 GGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 |||| | || || |||| |||||| ||||| Sbjct 310 GGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 >seq2255 Length=6208 Score = 547 bits (606), Expect = 8e-151 Identities = 722/990 (73%), Gaps = 12/990 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || ||||| ||||| || ||||| || |||||||||||| || Sbjct 1336 AGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAACGTTCATGCGGTTGGTCT 1277 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | ||||||||| | |||||||| || ||||||||||| Sbjct 1276 TGAGCAGCCATCCAAGCACGAATACCTTCATTAAGAAGGATGTTTTTAGTGTAGAACGTT 1217 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 ||||||||||| ||||||||||| | || ||||| || || ||||| |||||||| | | Sbjct 1216 TCGAACTCTGGGTCTTCTGCTGCACGAATTTCTTGTGAAACGAAGTCGTAAGCACGTAAG 1157 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | || | |||||| | ||| || | |||| | ||| |||| || || || Sbjct 1156 TTTAATGCTAAACCAATTACACCAATAGCTGACATCCATAAACCAGTAACTGGTACGAAT 1097 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||| ||||| || ||||| | || || || |||| ||| ||||||||||||||| Sbjct 1096 AACATGAAGAAGTGTAACCAACGTTTGTTTGAGAAAGCAACACCGAAGATTTGAGACCAG 1037 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 ||||||||||| |||||||| || || || ||||| |||| || | | |||||| | Sbjct 1036 AAACGGTTTGCAGTAACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTGAATGCACGG 977 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || ||||| || ||||| |||||| | | ||||| || ||||| ||||||| || Sbjct 976 AATGTGTTCGCACCGTCACCGTCTTCAAATAATGTGTTTTCAACAGTAGCACCGTGAATA 917 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | | | || | || | | ||| |||||||||||||| ||||||||||| ||| Sbjct 916 GCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTAAGC 857 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| ||||| ||||| | ||| | | ||| | || || || ||||||||||| Sbjct 856 GTCCAGTTGTGGAACCCCTGGAAGAATAAGATGAAACGGAAGATTGCGGCAACACCAAAA 797 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGA-TGAGAAACACACTGA--CA 102306 || ||||||||||||| || || || | ||| || | | ||||| ||||| Sbjct 796 CTAGGAGCAAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAAA---ACTGAAGTG 740 Query 102307 AAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCT 102365 || ||||| ||||| ||||||| |||||||| ||||| ||||| || | | | ||| | Sbjct 739 AATACAGCAATAGGAGCAGAGAATGCAATAGCGTTGTATGGACGTAAGTTAACTGAACGT 680 Query 102366 AGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCAC 102425 || | || |||||||| | |||||||||||| | |||||| |||||| | ||| | Sbjct 679 -GCGATTTCAAATTGACGTAACATGAAACCAATTAAACCAAATGAACCGTGTAAAGCAAT 621 Query 102426 AAAAGCCCAGAGTCCCCCAAGTTG-GACCCACCTGACGAAATCTCCTTGAGCTTCAGGAC 102484 ||||||||| | || |||||||| ||| || || || || |||||||||||||||| Sbjct 620 AAAAGCCCATAAACCGCCAAGTTGACACCAACGTG-TAAAGTCACCTTGAGCTTCAGGAC 562 Query 102485 CCCA-AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTA 102543 |||| ||| | || || ||| ||| |||| | || || || || |||||||| || Sbjct 561 CCCATAAGAATAATAA-AGAGTGAGCCATGCTATTTGCTGGTGTAGAAACAGCAGCAGTT 503 Query 102544 AGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCA 102603 | ||| ||| |||||| | |||| || || | ||||| || ||||| |||||| || Sbjct 502 AAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAGCCGTGTGTGTACCAAGAAGTAACA 443 Query 102604 AACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGT 102663 || || || ||||| | ||| || || | ||||| |||||| || || || | || | Sbjct 442 AAAGTAGTACCAGTTAACCAACCACCTACTGCGAAGTAAGCACATGGTAATAGTAATAAT 383 Query 102664 CCAGACCAACCCACAAAGACAAAGCGATCT 102693 || |||||||| || || || || || ||| Sbjct 382 CCTGACCAACCTACGAATACGAAACGGTCT 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633481116590160