Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3865 531 1e-146 >seq3865 Length=1303 Score = 531 bits (588), Expect = 1e-146 Identities = 713/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 21462 TCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAG 21521 || || || || | ||| || ||||||||||| ||||| || || ||||| || || | Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 || | ||| |||||||| | ||||||||||| ||||| | || | || | || | Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||||| ||||||||||| || | |||||||||||| || || | || | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| ||||| | |||||||| ||||| | ||||| || | ||| || Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||| |||||||| || | |||||||| || ||||||||||| || || Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTC 21821 ||||| || |||||||||||||| || ||||||| ||| ||| | | |||||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 21822 GTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCA 21881 || ||||| || | || || || || | ||||||||| |||||||| ||| ||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 21882 CCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 ||||| || || || ||||| | |||||| || || |||||||| || ||||| ||||| Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 ||||| || | |||| ||||||| || || || || || || |||||| | ||||| || Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || || || | || || | | ||| || ||||| ||||| || || || |||||| Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCG-ATAGCTAAGTTCCCACTCTCGTCC 22120 || || ||| |||||| || | ||| |||| || | || ||| |||||| || || || Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAA-TTCCCATTCACGACC 613 Query 22121 CATGTA--AGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCG 22178 |||||| |||||| || | ||| || |||||| | ||| | | |||| | ||||| ||| Sbjct 612 CATGTAGCAGCAAACAC-CTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCG 555 Query 22179 TTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATG 22238 ||||| | ||| || || | | ||||||||||| | |||||||||||||| || || Sbjct 554 TTGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATA 495 Query 22239 GCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCA 22298 || ||| | || | || || || || |||||||||||||| || || | || ||| Sbjct 494 GCGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCA 435 Query 22299 GCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATA 22358 | || ||||| ||||| || ||||||||||| || || || |||| || ||||| || Sbjct 434 GAAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATG 375 Query 22359 AAACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || || ||| || | | | ||| |||||||| | || || ||||| || | || Sbjct 374 AATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTAT 315 Query 22419 AGACGGTTATTAGTAGAGGTGACCCA 22444 | |||||| | |||||| || | ||| Sbjct 314 AAACGGTTTTCAGTAGAAGTAATCCA 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200878025560