Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3865 704 0.0 seq2255 495 4e-135 seq292 86.0 7e-12 >seq3865 Length=1303 Score = 704 bits (780), Expect = 0.0 Identities = 758/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| |||| |||| |||||| ||||||||||| || || | ||| ||||| ||||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || ||||| || | ||| | | ||| |||| || | | || | || ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 |||||||||||||| ||||||||||| || | |||||| ||||| || | | ||| | | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | || | ||||| || | |||| ||||||||| | | ||| Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||||||||| || ||||| || | |||||||||||||||||| || ||||| ||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 |||||||||||||| ||||| ||||| |||||| ||| ||| || | || ||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| | ||||| |||||||||||| | |||||| |||||||| ||||||||||| || Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 || || | || || || ||| ||||||||| || ||||| || ||||| || || ||| Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| |||| ||| |||||||||||||| || ||||| | |||||||| ||||||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 ||||| ||||| | ||||| | |||||| || || ||||| | |||||||| || Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 ||||| ||| |||||| |||||||| ||||| | | | |||| |||||| | | ||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 124700 ATGTATGCTG-AAATACC-AATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCAT 124757 ||||| || | ||| ||| |||||| |||||| ||| | || || ||||||||||| | Sbjct 611 ATGTA-GCAGCAAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGT 554 Query 124758 TATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAG 124817 | || ||||| || || | || ||| |||||||| | |||||||||||||| || |||| Sbjct 553 TGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAG 494 Query 124818 CGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCG 124877 |||| || | || | || |||||||| |||||||||||||| ||||| |||||||| | Sbjct 493 CGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAG 434 Query 124878 CTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGA 124937 |||||||| | ||| |||||||| || || ||||| ||||||| || || | ||||| Sbjct 433 AAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGA 374 Query 124938 A-ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAA 124996 | ||| | || |||||| | |||||| |||||||| | |||||||||||||| | || Sbjct 373 ATACA-GATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTAT 315 Query 124997 ATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 | | ||| | || || || | |||||||||||| Sbjct 314 AAACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 >seq2255 Length=6208 Score = 495 bits (548), Expect = 4e-135 Identities = 736/1043 (71%), Gaps = 23/1043 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || |||||||| | ||||| ||||||||||||||||| ||| ||||||||||| Sbjct 1340 TTATAGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAACGTTCATGCGGTTG 1281 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 ||| || | |||||| || | || |||||||||||||| ||||| || || ||||| Sbjct 1280 GTCTTGAGCAGCCATCCAAGCACGAATACCTTCATTAAGAAGGATGTTTTTAGTGTAGAA 1221 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 || ||||||||||||||||||||||| | || ||||| || || |||||||| || | Sbjct 1220 CGTTTCGAACTCTGGGTCTTCTGCTGCACGAATTTCTTGTGAAACGAAGTCGTAAGCACG 1161 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| | ||||| ||| | | ||| |||| ||| |||| | ||| | || || || Sbjct 1160 TAAGTTTAATGCTAAACCAATTACACCAATAGCTGACATCCATAAACCAGTAACTGGTAC 1101 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 ||| ||||| | ||||||||| | | |||||| || || || | ||| || || || || Sbjct 1100 GAATAACATGAAGAAGTGTAACCAACGTTTGTTTGAGAAAGCAACACCGAAGATTTGAGA 1041 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| || |||| |||| || ||||||||| | || || || | |||||| Sbjct 1040 CCAGAAACGGTTTGCAGTAACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTGAATGC 981 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || || || ||| ||| ||||||| | ||||| Sbjct 980 ACGGAATGT-GT--------TCGCACCGTCACC------------GTCTTCAAATAATGT 942 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || || ||||| ||||| ||||||| ||| || |||||| | || ||||| Sbjct 941 GTTTTCAACAGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAAC 882 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||||||| ||||| || | || ||||||||| || || | ||||||||| | Sbjct 881 ACCCATCATGTGGAATGGGTTAAGCGTCCAGTTGTGGAACCCCTGGAAGAATAAGATGAA 822 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| |||||||| || ||||| || || || |||||||||| ||||||| || Sbjct 821 ACGGAAGATTGCGGCAACACCAAAACTAGGAGCAAAGAACCAACCTGATTGACCTAAAGG 762 Query 123466 ATAGATCA-GAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 || || | |||| || |||||| || || ||| |||||||||||| | ||||||| Sbjct 761 GTAAATTAAGAAAACTGA-AGTGAATACAGCAATAGGAGCAGAGAATGCAATAGCGTTGT 703 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 | || | | | || | |||||| |||||||| | | ||||||||| || | | Sbjct 702 ATGGACGTAAGTTAACTGAACGTGCGATTTCAAATTGACGTAACATGAAACCAATTAAAC 643 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| || ||||| || | ||| ||||| ||| || ||||| ||||||| | Sbjct 642 CAAATGAACCGTGTAAAGCAATAAAAGCCCATAAACCGCCAAGTTGACACCAACGTGTAA 583 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||| |||||||| ||||| | ||| | | | ||| |||| | | | Sbjct 582 AGTCACCTTGAGCTTCAGGACCCCATAAGAATAATAAAGAGTGAGCCATGCTATTTGCTG 523 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 |||| || || || || ||||||||||| || || | || |||| || | || | Sbjct 522 GTGTAGAAACAGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAGCCGT 463 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 |||| ||||| || ||||| || ||||| || ||||||||||| | || | || | Sbjct 462 GTGTGTACCAAGAAGTAACAAAAGTAGTACCAGTTAACCAACCACCTACTGCGAAGTAAG 403 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 |||| || | ||||| | || ||||| |||| |||||| ||||| ||| ||||| Sbjct 402 CACATGGTAATAGTAATAATCCTGACCAACCTACGAATACGAAACGGTCTTGACGTAACC 343 Query 123885 AGTCGTCAAGAACATCAAACCAA 123907 |||||||| |||| |||||| Sbjct 342 AGTCGTCAGCGTCATCGAACCAA 320 >seq292 Length=128933 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 124718 ATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACA 124777 ||||| |||||| | | || || || | |||||||| || || |||||||| || | | Sbjct 40672 ATAAG-AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAA 40730 Query 124778 GTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAAC 124836 | ||| |||||||| | |||||||||||||| || |||||||| || | ||| || || Sbjct 40731 GATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGACTAC 40789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578968711857040