Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3865 769 0.0 seq2255 462 3e-125 seq292 91.5 2e-13 seq596 86.0 8e-12 >seq3865 Length=1303 Score = 769 bits (852), Expect = 0.0 Identities = 771/996 (77%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| ||| ||| | || | || || || || ||||| | |||||| || || || | Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 || | ||||||||||| | ||| ||||||||||| | |||||||| || || ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || ||||||||||||||||| || ||||||||||| || |||| ||| | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || ||||||||||| || | || ||||| ||||| | ||||||||| || ||||| ||| Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||||||||| |||||||| || |||||||| ||||| || || || || |||||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || ||||| ||||||||||| |||||| ||| ||| || ||||||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||||| | ||||||||||| | | |||||||| |||||||| | ||| ||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 || || || ||||||||||| | ||||||||| |||||||||||||| |||||||| || Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||| | |||| |||| ||||||||||| ||||| | ||||||| | || ||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 ||||||||||||| ||| |||| | ||| |||||| | ||||| || ||||| ||||| Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 || |||||| |||||||||||||||||||||||| | || | |||||| ||||| ||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 27385 ATATA--AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGT 27442 || || |||| | | || | | ||||||| | || | | |||| |||||||||||| Sbjct 611 ATGTAGCAGCAAACA--CCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGT 554 Query 27443 TATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTG 27502 | || |||||||| || | ||||| |||||||| | |||||||||||| | ||| || | Sbjct 553 TGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAG 494 Query 27503 CATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAG 27562 | || ||| | |||| || |||||||||||||||||||| || || | | ||||||| Sbjct 493 CGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAG 434 Query 27563 CAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGA 27622 ||| |||||||| |||||||| || || || || || ||||| | ||| |||| |||| Sbjct 433 AAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGA 374 Query 27623 A-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATAC 27681 | |||| ||||||| ||| | || ||||| | |||||| |||||||| | || Sbjct 373 ATACAGA-TGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTAT 315 Query 27682 AAACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||||| | ||| || || | ||||||||||||| Sbjct 314 AAACGGTTTTCAGTAGAAGTAATCCACTCACAGAAA 279 >seq2255 Length=6208 Score = 462 bits (512), Expect = 3e-125 Identities = 648/904 (72%), Gaps = 4/904 (0%) Strand=Plus/Minus Query 23490 ATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTC 23549 || ||||| |||||||| || || || ||||| || |||||||| ||||| Sbjct 1237 ATGTTTTTAGTGTAGAACGTTTCGAACTCTGGGTCTTCTGCTGCACGAATTTCTTGTGAA 1178 Query 23550 ACAAAATCATAAGCACG-AAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCA 23608 || || || |||||||| ||| |||| || | ||||| | ||||||| || | ||| Sbjct 1177 ACGAAGTCGTAAGCACGTAAGTTTAAT-GCTAAACCAATTACACCAATAGCTGACATCCA 1119 Query 23609 AAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGC 23668 | ||| | || || || || ||||| |||||||| |||||||| || || || || Sbjct 1118 TAAACCAGTAACTGGTACGAATAACATGAAGAAGTGTAACCAACGTTTGTTTGAGAAAGC 1059 Query 23669 AACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTC 23728 ||| ||||||||||| ||||| ||||| ||||| |||||||| || || || || || | Sbjct 1058 AACACCGAAGATTTGAGACCAGAAACGGTTTGCAGTAACCATAGAGTATGTTTCTTCTGC 999 Query 23729 CTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATT 23788 ||||| | | ||| || || ||||| || || || |||||| | | ||| || Sbjct 998 TTGAGTTGGGTTGAATGCACGGAATGTGTTCGCACCGTCACCGTCTTCAAATAATGTGTT 939 Query 23789 CTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCC 23848 || |||||| | || ||||||||| | | | || | || | | ||||||||| || Sbjct 938 TTCAACAGTAGCACCGTGAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACC 879 Query 23849 CATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCT 23908 |||||| ||||| ||||| ||||||||||| || || ||||||| ||| | | ||| | Sbjct 878 CATCATGTGGAATGGGTTAAGCGTCCAGTTGTGGAACCCCTGGAAGAATAAGATGAAACG 819 Query 23909 GAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATA 23968 ||| || || |||||||| ||||| || |||||||||||| ||| || || ||||| || Sbjct 818 GAAGATTGCGGCAACACCAAAACTAGGAGCAAAGAACCAACCTGATTGACCTAAAGGGTA 759 Query 23969 GATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGG 24028 || | ||| || || |||||||||||||||| |||| || ||||| || ||||| || Sbjct 758 AATTAAGAAAACTGAAGTGAATACAGCAATAGGAGCAGAGAATGCAATAGCGTTGTATGG 699 Query 24029 ACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAA 24088 ||| | || | |||||| | |||||| ||||||||||| ||||| || | |||| Sbjct 698 ACGTAAGTTAACTGAACGTGCGATTTCAAATTGACGTAACATGAAACCAATTAAACCAAA 639 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTC 24148 | |||||| | ||||| ||| | ||| | || |||||||| ||| ||| |||||| Sbjct 638 TGAACCGTGTAAAGCAATAAAAGCCCATAAACCGCCAAGTTGACACCAACGTGTAAAGTC 579 Query 24149 CCCTTGAGACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCG 24207 ||||||| ||||||||||| ||| | || || ||| ||| |||| | || || | Sbjct 578 ACCTTGAGCTTCAGGACCCCATAAGAATAATAA-AGAGTGAGCCATGCTATTTGCTGGTG 520 Query 24208 TCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGG 24267 | || ||||| || || | |||||| ||| || | || ||| |||| | || || | Sbjct 519 TAGAAACAGCAGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAGCCGTGTG 460 Query 24268 TGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAG 24327 |||||||| |||||||||| || ||||| | |||||| || | || | |||||| Sbjct 459 TGTACCAAGAAGTAACAAAAGTAGTACCAGTTAACCAACCACCTACTGCGAAGTAAGCAC 400 Query 24328 TGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGT 24387 || | |||| | ||| |||||||| || || || || || || | | ||||| Sbjct 399 ATGGTAATAGTAATAATCCTGACCAACCTACGAATACGAAACGGTCTTGACGTAACCAGT 340 Query 24388 CGTC 24391 |||| Sbjct 339 CGTC 336 >seq292 Length=128933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 27402 GATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAG 27461 |||||| |||||| | || || | |||| |||||||| ||| || ||||| || || | Sbjct 40671 GATAAG-AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAA 40729 Query 27462 TGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAAC 27521 ||||| |||||||| | |||||||||||| | ||| || || || ||| ||||||| || Sbjct 40730 AGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGACTAC 40789 >seq596 Length=73847 Score = 86.0 bits (94), Expect = 8e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 48037 TAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAG 48096 |||||||| | |||||| | || || || || ||||||||||| || || || || ||| Sbjct 24707 TAGTTCTTGATGATCCAGAAGCCGTACAGCTTGGCAACACCATAGGGGGAGCGGGGGTAG 24766 Query 48097 AAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGAT 48156 || || |||||||| |||| || ||| |||||| || || || ||| |||||| Sbjct 24767 AAGGGGGTGGTCTCGCTCTGCGGCACCTCCTGCACCAGGCCGTACAGCTCAGAGGTGGAG 24826 Query 48157 GCTTGATAGA 48166 || ||||||| Sbjct 24827 GCCTGATAGA 24836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665460276774640