Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1341 104 3e-17 seq161 89.7 6e-13 seq310 87.8 2e-12 seq135 86.0 7e-12 >seq1341 Length=23566 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | ||||||||| || ||||| ||||||||| ||| || || Sbjct 13952 CTTCGCCGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCTTCTTCAGCGGCTCGTT 13893 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || | ||| | |||||||| || |||||||| || || |||||| || || Sbjct 13892 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCCAACGA 13833 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || ||||| | ||| || |||||| Sbjct 13832 GCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGCC 13793 >seq161 Length=178624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 6084 ATGGCGGCAAATGGTCCGATTGAATTGGCAACATCATTGGCACCGTGTGCGAACGAATCA 6143 ||| |||| || || |||| || ||||||||||| ||||| ||||| ||||| || | Sbjct 11349 ATGCCGGCGAAGGGGCCGACCGAGTTGGCAACATCGTTGGCGCCGTGGGCGAAGGACACG 11408 Query 6144 CAACATGCCGTTAAGATCTGAAGGTACCTCATAGA-GTGTTCGGTCTTTGTGTCAAATAC 6202 || ||||||| | || |||||||| | ||||| || ||||| | || |||||| || Sbjct 11409 CAGCATGCCGACACGACTTGAAGGTA-TTTATAGACCTGCTCGGTGTGTGGGTCAAACAC 11467 Query 6203 CTCCGCATTGTCGTGGAT 6220 ||| ||| |||||||| Sbjct 11468 CTCGGCAGACTCGTGGAT 11485 >seq310 Length=124157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 175486 GATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGT-ATGCCAGCAAATGACGA 175544 |||||||||||||| |||||| ||| || ||||| | || || | || ||||| Sbjct 85661 GATGAGATTGATGCCGTGGGCCGCTCGCGCGGCACTGGTATTGGTGGCA-CCAACGACGA 85603 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG 175604 | | || || || | || || || ||||| |||||||| ||||| || | || || Sbjct 85602 GCGTGAGCAGACGCTGAACCAGCTGCTCACGGAGATGGACGGCTTCGAGGGCAACACCGG 85543 Query 175605 CATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCC 175664 || | || ||||| ||||| || || | || ||||| || |||||| || ||||| Sbjct 85542 TATCATTGTCATTGCCGCCACCAACCGTGCTGACATCCTAGACCCCGCCCTGCTGCGCCC 85483 Query 175665 GGGTCGTTTTGATCGCAAGATC 175686 ||| || || |||||| || || Sbjct 85482 GGGCCGCTTCGATCGCCAGGTC 85461 >seq135 Length=196152 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 75426 GTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCA 75485 |||||| ||||| ||||||||||| || || || ||||| || | | | |||| Sbjct 154115 GTGCGCGCATCTCCAAGTGGGCTGGCGGCATCGGTGTGCACGTCAGCAACATCCGTGCCA 154174 Query 75486 ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 | || || || | | || || || | || || || || | || ||||| | Sbjct 154175 AGGGCTCGCGCATCATGAGCACCAACGGCCGGTCCGACGGCATCGTGCCCATGCTCAAGG 154234 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAGGGGTCCATCGCGG 75605 | || |||| || || || ||| || ||| |||| |||||||| || ||||||| Sbjct 154235 TGTTCAACGAGACCGCACGGTATTGCAACCAATCGGGCAAGCGCAAGGGCTCGATCGCGG 154294 Query 75606 TCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAG 75665 | |||||||| |||||||| ||||| | |||||| | |||||||||| ||| || Sbjct 154295 TGTACTTGGAGCCATGGCACGCCGACGTGTGGGAGTTTGTGGAGTTACGACAGAACACAG 154354 Query 75666 GTGACGA 75672 | | ||| Sbjct 154355 GCGCCGA 154361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596539010893760