Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3865 661 0.0 seq292 89.7 6e-13 >seq3865 Length=1303 Score = 661 bits (732), Expect = 0.0 Identities = 746/994 (75%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| |||| |||||||||| ||||||||||| || || | ||| ||||| ||||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 |||||||| || | ||| | | |||| |||| || | | ||| | | ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATA 8061 |||||||||||||| ||||| || ||||||||||| || ||||| || | | ||| | | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 8062 GAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTG 8121 | ||| ||||| | || | || || | | ||| | ||||||||| | | | | Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 8122 TTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA 8181 ||||| || || || || ||||| ||||| | ||||||||| || |||||||| || || Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 8182 TTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTT 8241 || || || ||||| |||||||| || |||||| ||| || || | ||||||| Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || || | ||||| ||||||||||||||||||||||||||| ||| ||| | || ||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 || || | ||| || || ||| ||| ||||| || |||||||| ||||| || || ||| Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 |||||||||| ||||||||| || |||||||||||||||| |||||| || ||||||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 ||||| ||||| | || || | |||||| ||||| |||||| | ||||| ||| Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 || |||||| ||||||||| | ||||||||| ||| | ||||| ||||| | | |||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 8542 ATGTAAGCAG-AAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599 ||||| |||| ||| || |||||| |||||| | | | || || || ||||| |||| Sbjct 611 ATGTA-GCAGCAAACACCTAATAAG-AAGTGGCAAACGATTAATTGGTAAGGACCACCGT 554 Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659 | || |||||||| ||||| | ||||||||||| | || ||||||||||| ||||||| Sbjct 553 TGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAG 494 Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTG 8719 |||| |||| || | ||||||||||| ||||||||||| || || | || ||||| | Sbjct 493 CGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAG 434 Query 8720 CAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAA 8779 ||| |||||||| ||||||||||| || || || ||||| |||| || || | ||| | Sbjct 433 AAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGA 374 Query 8780 AGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAA 8839 | || | || | ||| |||||||||||||| | || ||||||||||||| || | Sbjct 373 ATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATA 314 Query 8840 GTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | ||| | ||| |||| |||||| || || Sbjct 313 AACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 >seq292 Length=128933 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 8560 ATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAAT 8619 ||||| |||||| | | || || || | ||||| | ||| || ||||| || ||||| Sbjct 40672 ATAAG-AAGTGGCACACGACTAATTGGTGAGGACCACTGTTGTATAACCATTCGTCTAAA 40730 Query 8620 GTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACA 8679 | ||||||||||| | || ||||||||||| ||||||||||| |||| ||| || ||| Sbjct 40731 GATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAGAAGTTGGGACTACA 40790 Query 8680 G 8680 | Sbjct 40791 G 40791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615830821655440