Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq3865 749 0.0 seq2255 547 7e-151 seq3842 102 9e-17 >seq3865 Length=1303 Score = 749 bits (830), Expect = 0.0 Identities = 767/995 (77%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 ||||| || ||| |||| || | |||||| | || |||||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||||| | || ||||||| ||||| |||||| |||| ||| | || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || ||||||||||| ||||||||||| || |||||||| | | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 |||||| |||||||| || | || |||| ||||| |||||| |||||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| ||||| | ||||| ||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 166068 CTTCCACTTCCTGATTGGCATCTATGC--CTACATGGGTCGTGAGTGGGAACTGTCTTAC 166125 | |||||| || ||| | | | ||| ||||||||||||||| |||||| | |||| | Sbjct 579 TTGCCACTT-CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 166126 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGT 166185 ||| |||||||||||||||||||| ||| |||||||| |||||||| || ||||| | | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 166186 GCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 166245 ||||| ||| || | || ||| ||||||||||| |||||||| | ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 || || || || ||||||| |||| | || ||||||||||| ||||| || || ||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || ||||| ||| | || |||||||| || |||||||| ||| || ||| |||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || ||| ||||| |||||| | | | || || ||||||| |||||| ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 |||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 |||||||| || |||||||||||||||||||||||||| || || || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 ||||| |||||||| |||| ||||||||||| || | || | || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||||| |||||||||||||||||||| || | |||| ||| |||||||| || ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAAC 166725 || ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 166726 GCACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 || ||||||||||| || ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 547 bits (606), Expect = 7e-151 Identities = 718/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 167044 GATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 167103 || ||||| || || || || ||||| ||| | | || || || |||||| | || Sbjct 354 GACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATTACCATGTGCTTACTTCGCA 413 Query 167104 ATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCG 167163 | || |||||| | ||||| |||||||| || || |||||| || || || | || Sbjct 414 GTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTGGTACACACACGGCTTAGCT 473 Query 167164 TCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCT 167223 | ||| | || ||| ||||| | ||||| || ||| ||| |||||| || Sbjct 474 ACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGTTTCTACACCAGCAAATAGC 533 Query 167224 ATGGGTCATTCTTTACTTCTTCT-ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTG 167282 |||| ||| |||||| || |||| ||||||||||||| ||||||| || || | || Sbjct 534 ATGGCTCACTCTTTA-TTATTCTTATGGGGTCCTGAAGCTCAAGGTGACTTTACACGTTG 592 Query 167283 GCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGG 167342 | |||||||| || | ||||||||| | || | ||||| | |||| | | ||||| Sbjct 593 GTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGGTTCATTTGGTTTAATTGG 652 Query 167343 TTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTAT 167402 ||||||| | || || |||||| | || || || | ||||| ||||| ||||| Sbjct 653 TTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACTTACGTCCATACAACGCTAT 712 Query 167403 TGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCA 167462 ||| ||||||| |||||||||||| ||| | |||||| | | || || | ||||| Sbjct 713 TGCATTCTCTGCTCCTATTGCTGTATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCA 772 Query 167463 AAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTT 167522 | | ||||||||||| || || || || ||||| |||||||| ||| || | || Sbjct 773 ATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATT 832 Query 167523 CCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTAT 167582 | |||| || |||||||||||||| || || ||||| || ||||||||||| || ||| | Sbjct 833 CTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGT 892 Query 167583 CCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGA 167642 | |||| ||| || | | ||| || || |||| ||| || || || || || | ||| Sbjct 893 TTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGA 952 Query 167643 AGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTA 167702 ||| ||||| || ||||| || |||||| | | ||||| | |||||| || || Sbjct 953 AGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATA 1012 Query 167703 TTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAA 167762 || |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 1013 CTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAA 1072 Query 167763 ACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGAT 167822 ||| ||| | || ||||| ||||||||||| || |||| || | |||| ||| | || Sbjct 1073 ACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTAT 1132 Query 167823 TGGCATCATTGGTCTGGCTCTTAATCTT-CGTGCTTACGATTTCGTTTCTCAAGAGATCA 167881 ||| | |||||| | || |||| ||| ||||||||||| |||||||| ||||| || Sbjct 1133 TGGTGTAATTGGTTTAGC-ATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTC 1191 Query 167882 GAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAG 167941 | || || || || |||||||| ||||| ||||| ||||||||||||||||| ||||||| Sbjct 1192 GTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAG 1251 Query 167942 GTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGG 168001 || |||| || ||| | || || || ||||| ||||| || || |||||||| | Sbjct 1252 GTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAG 1311 Query 168002 AAGTTCTCCCACGAGGCAACGCACTATAA 168030 |||| | || || || ||||| |||||| Sbjct 1312 AAGTATTACCTCGTGGTAACGCTCTATAA 1340 >seq3842 Length=1340 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 || |||||||||||| || ||||| |||| ||||||| ||||||||||||||||||| || Sbjct 788 TCTTCAGTAGCTCAGTGGTAGAGCGATCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 729 Query 18189 CTACCTGGGGAGTT 18202 |||||||||||||| Sbjct 728 CTACCTGGGGAGTT 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561219222008800