Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq879 179 5e-40 seq12 167 3e-36 seq52 163 4e-35 seq238 132 6e-26 seq5 87.8 2e-12 >seq879 Length=48288 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || ||||| || ||||||||||| || Sbjct 2508 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCT 2567 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||| || || ||||| |||||||| || || ||| Sbjct 2568 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2627 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || ||||| || || || || || |||||| Sbjct 2628 CAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAAC 2687 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | || || ||||| Sbjct 2688 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGG 2734 Score = 176 bits (194), Expect = 6e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || || || ||||| ||||| ||||| || ||||||||||| || Sbjct 3808 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCT 3867 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||| || || ||||| |||||||| || || ||| Sbjct 3868 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3927 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || ||||| || ||||| ||||| |||||| Sbjct 3928 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAAC 3987 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| ||||||||||| || ||||| || || Sbjct 3988 ATTCAGAAGGAGTCTACGCTGCACCTGGTGCT 4019 Score = 107 bits (118), Expect = 3e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| ||||| || ||||| || || |||||||| || || ||||| || ||||| || Sbjct 3151 AGGCATCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCG 3210 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 ||||| ||||| |||||| | || ||||||||||| || ||||| || || | || || Sbjct 3211 CACCCTGGCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCG 3270 Query 172083 GGGTGGT 172089 |||||| Sbjct 3271 CGGTGGT 3277 Score = 105 bits (116), Expect = 9e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| ||||| || ||||| || || |||||||| || || ||||| || ||||| || Sbjct 3681 AGGCATCCCACCGGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCG 3740 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 ||||| ||||| |||||| | || ||||||||||| || ||||| || || | || || Sbjct 3741 CACCCTGGCTGACTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCG 3800 Query 172083 GGGTGG 172088 ||||| Sbjct 3801 CGGTGG 3806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || || ||||| || || || || || || || ||||| || ||||| || Sbjct 2381 AGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCG 2440 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| | || ||||||||||| || ||||| || || | || || Sbjct 2441 CACGCTGGCCGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCG 2500 Query 172083 GGGTGG 172088 ||||| Sbjct 2501 CGGTGG 2506 >seq12 Length=425388 Score = 167 bits (184), Expect = 3e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 401068 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 401009 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 401008 GACACCATTGACAACGTCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCAG 400949 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || || || ||||| |||||| Sbjct 400948 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400889 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || ||| | || || Sbjct 400888 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCT 400857 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 401296 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401237 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| ||||| || || ||||| |||||||| || || ||| Sbjct 401236 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 401177 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || || || |||||||||||| Sbjct 401176 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAAC 401117 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||| | || || | || || ||||| Sbjct 401116 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGTGG 401070 Score = 161 bits (178), Expect = 1e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || ||||| ||||| || || |||||||| |||||||||||||| Sbjct 400612 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 400553 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| ||||| || || ||||| || || || ||||| ||| Sbjct 400552 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 400493 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || || || ||||| |||||| Sbjct 400492 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400433 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||| | || || Sbjct 400432 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCT 400401 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| || || || || ||||| || || || ||||| || || ||||| || ||||| || Sbjct 402647 AGGTATCCCCCCAGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCG 402588 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || | ||||| |||||| | || ||||||||||| || ||||| || || | || || Sbjct 402587 CACGTTGGCTGACTACAACATCCAGAAGGAGTCTACCCTGCACCTCGTGCTGCGCCTGCG 402528 Query 172083 GGGTGGT 172089 |||||| Sbjct 402527 TGGTGGT 402521 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| || || ||||| ||||| || || || || |||||||||||||| ||||| Sbjct 403145 AGGATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 403086 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 || ||||| || || ||| |||| |||||||| || ||||| || Sbjct 403085 TCGGACACTATTGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGG 403039 >seq52 Length=282368 Score = 163 bits (180), Expect = 4e-35 Identities = 393/591 (66%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 196289 GTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTC 196348 || || ||||| || || || ||||| || ||| | || | |||| ||||||| Sbjct 204840 GTGCTGGTGGGCGGCTCCACGCGTATCCCCAAGGTGCAGTCGCTGCTGCAGGACTTCTTC 204781 Query 196349 AATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCC 196408 || || || | ||||| | |||||||| || || || || || || || || ||| Sbjct 204780 AACGGCAAGGAGCTCAACAAGTCCATCAACCCCGACGAGGCCGTCGCGTACGGCGCCGCC 204721 Query 196409 GTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTT 196468 || ||||| || || ||| | || | | | | || || || || || ||||| || Sbjct 204720 GTGCAGGCAGCCATCCTCACGGGCGCCGGCGGCGAGAAGGTGCAGGACCTGCTGCTGCTG 204661 Query 196469 GATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATT 196528 || || || || | | |||| | || || ||||| ||||| ||||| | || Sbjct 204660 GACGTCGCGCCGCTGAGCATGGGCATCGAGACCGCGGGCGGTGTGATGACGGTGCTCATC 204601 Query 196529 GATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAAT 196588 | | ||||| || || || || |||||||| || ||||| || || || | || || Sbjct 204600 CCTCGCAACACCACCATCCCCACCAAGAAGGAGCAGGTCTTCTCCACCTACGCGGACAAC 204541 Query 196589 CAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCAT 196648 || || || || | || || || || || || || || | || | ||||| ||| | Sbjct 204540 CAGCCGGGCGTGCTCATCCAGGTGTACGAGGGTGAGCGTGCGCGCACCAAGGACAACAAC 204481 Query 196649 CTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 || || || | ||||| | | || || || | |||||| | || || || ||||| Sbjct 204480 CTTCTGGGCAAGTTCGAGCTCAGCGGCATCCCCCCCGCACCCCGCGGCGTACCCCAGATC 204421 Query 196709 AATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGC- 196767 | || || || || ||||| || || || || ||||| | || ||||||||||| Sbjct 204420 AGCGTCACATTTGACATCGACGCCAACGGCATCCTCAACGTGTCTGCGGAGGACAAGGCA 204361 Query 196768 TTCTGGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGG 196826 | | |||| | ||| ||||| || ||||| |||||||| || || ||||| | Sbjct 204360 TCCGGGCAGA--AGAACAAGATCACCATCACCAACGACAAGGGCCGCCTGAGCAAGGACG 204303 Query 196827 AAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | ||||| || ||||| || || || || ||||||| || || ||||||| Sbjct 204302 ATATTGAGCGCATGGTGCAGGAGGCTGAGAAGTACAAGGCCGACGACGAGG 204252 >seq238 Length=145596 Score = 132 bits (146), Expect = 6e-26 Identities = 230/329 (70%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || | | | |||| || ||||| || | || || | ||| Sbjct 138184 AAGATGAAGGAGACTGCTGAGGCGTACCTGGGCAAGACTGTCAAGCACGCCGTCATCACT 138243 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || | || || ||||| ||||||||||||| | | || ||| Sbjct 138244 GTGCCTGCCTACTTCAACGACGCTCAGCGCCAGGCCACAAAGGACGCTGGTACAATCGCG 138303 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | | | | ||||| || || || || || || | |||||||||||| Sbjct 138304 GGCCTGAACGTTGTGCGCGTGATCAACGAGCCCACTGCAGCCGCGCTGGCTTATGGTCTG 138363 Query 195842 GACAAGAA---CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 |||||||| || |||| ||| || || ||| | ||||| || ||||| || || Sbjct 138364 GACAAGAAGAGCATGGAC-AAG---AACAT-CCTTG-TGTTTGACCTGGGTGGCGGCACT 138417 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || || || || | || | ||||| ||| | || || || | | || | ||| Sbjct 138418 TTCGACGTGTCCATCCTTACCATTGACAACGGTGTGTTTGAGGTCTTGTCCACGTCGGGT 138477 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || |||||||| || ||||| Sbjct 138478 GACACCCACCTTGGTGGTGAGGACTTCGA 138506 Score = 131 bits (144), Expect = 2e-25 Identities = 225/326 (69%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || | | | |||| || ||||| || | || || | ||| Sbjct 132801 AAGATGAAGGAGACCGCTGAGGCGTACCTGGGCAAGACTGTCAAGCACGCCGTCATCACT 132860 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || | || || ||||| ||||||||||||| | | ||| | Sbjct 132861 GTGCCTGCCTACTTCAACGACGCTCAGCGCCAGGCCACAAAGGACGCTGGTACGATTTCT 132920 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | | | | ||||| || || || ||||| |||||||| || || || Sbjct 132921 GGCCTGAACGTTGTGCGCGTGATCAACGAGCCTACTGCGGCAGCAATTGCATACGGCCTT 132980 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| |||| | || || || | | | ||||| || ||||| || || || Sbjct 132981 GACAAG---AAGGGTGGCGAGAAGAACATCCTTGTGTTTGACCTGGGTGGCGGCACTTTC 133037 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || | |||| ||||| ||| | || || || | | || | ||||| Sbjct 133038 GATGTGTCCATCCTCACCATTGACAACGGTGTGTTTGAGGTCGTGTCCACGTCGGGTGAC 133097 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || |||||||| || ||||| Sbjct 133098 ACCCACCTGGGTGGTGAGGACTTCGA 133123 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || |||||||| | || || || ||||| || || || || | | || | |||||| Sbjct 137548 ATCGGTATCGACCTGGGCACCACCTACTCCTGCGTGGGCGTGTACAAGAACGGTCGTGTT 137607 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 |||||||| |||| ||||| || ||||||| || || ||||| || || || || || Sbjct 137608 GAGATTATTGCGAACGACCAGGGTAACCGTATCACGCCCTCGTATGTCGCTTTCACCGAA 137667 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || || ||| | || ||||| || || || ||| || | | ||||| | |||||| Sbjct 137668 ACCGAGCGCCTCATCGGGGATGCTGCCAAGAACCAGGCAACAGTCAACCCCAGAAATACT 137727 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGT 195515 ||||||||| |||||||| || || || |||| Sbjct 137728 GTCTTTGACATCAAGCGTCTCATCGGCCGGAAGT 137761 >seq5 Length=471533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 52291 GCGTTGTCGATGCGGGAGAAGTTGCATGTACCGGTAGGCTGATGTTCCTCGGGCTTGAGG 52350 || || |||||||| || | ||||||||| ||| | ||||| ||||||||||||||||| Sbjct 218030 GCATTATCGATGCGCGACATGTTGCATGTTCCGCTGGGCTGGTGTTCCTCGGGCTTGAGC 217971 Query 52351 GCGAAGGAGTACGCGTAAAT-ACCGGGCATGGGGCAACCAGAGTGGTGGTTGAAGGGCTG 52409 ||||| ||||| || | || || | | ||| | | |||||| | | ||||||| Sbjct 217970 GCGAACGAGTAGACGCAGATGCCCTTGGAGGGGACGTTC-TCGTGGTGTTGGTAGGGCTG 217912 Query 52410 CACGGAGTTGAAGTA 52424 |||| ||||||||| Sbjct 217911 CACGAGGTTGAAGTA 217897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657828668105440