Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3865 531 1e-146 >seq3865 Length=1303 Score = 531 bits (588), Expect = 1e-146 Identities = 713/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 41243 TGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCG 41302 ||| | || |||||| | |||||| | || | || ||||| || || | |||||||| Sbjct 289 TGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATCATGATTCCT 348 Query 41303 TGCCTCCTTGCCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGAC 41362 ||| | | | || ||| || || || ||||| || |||| || || || |||||| Sbjct 349 TGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCTCCAGTTGAC 408 Query 41363 ATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCA 41422 ||||| || ||||| ||||| || |||| || | || || |||||||||||||| || Sbjct 409 ATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATTTCT 468 Query 41423 GGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 41482 || || || | || | ||| || || || |||||||||||||| | ||||||||| Sbjct 469 GGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCT 528 Query 41483 GCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTC 41542 || | | || || ||| | |||||||| ||||| | |||| | | ||| | |||||| Sbjct 529 GCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTT- 587 Query 41543 CTCATTGGCGTCTTTGCT--TACATGGGACGAGAGTGGGAACTTAGCTAT-CGACTAGGG 41599 || ||| | || |||||| |||||||| || || |||||| ||| || | || |||| Sbjct 588 CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAGGT 645 Query 41600 ATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTC 41659 ||| | || |||||| ||| || |||||||| || || || ||||| ||||| || ||| Sbjct 646 ATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCAGTTTTC 705 Query 41660 CTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGC 41719 | | || || | || || || || || ||||| | |||||| || || || || || Sbjct 706 TTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTATTTCTGGT 765 Query 41720 ACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCAC 41779 || ||||||| |||| | || ||||| ||||| ||||| || |||||||| || || ||| Sbjct 766 ACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCCATTCCAC 825 Query 41780 ATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTG 41839 ||| | ||||| || || || |||||||| ||| |||||||| ||||||||| | Sbjct 826 ATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGGTTCTTTA 885 Query 41840 GTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAG 41899 || || || || | || ||||| || |||||| | | ||| ||| ||||||| Sbjct 886 GTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGGTTACCGT 945 Query 41900 TTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTT 41959 || |||||||||||||| || ||||| || || ||||||||||| || |||||||| | Sbjct 946 TTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGGTCGTTTA 1005 Query 41960 ATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGG 42019 || |||||||| ||| || || || || ||| | || ||||| | ||||| ||| Sbjct 1006 ATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGG 1065 Query 42020 CCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAAT 42079 ||||| | ||||| ||||| |||| | || | || || |||||||||||| | || Sbjct 1066 CCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAACCTTAAC 1125 Query 42080 GGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCT 42139 ||||||||||| |||||||| | | | || | || | || | ||||| |||||| Sbjct 1126 GGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCT 1185 Query 42140 GACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAAC 42199 ||||| | |||||||| ||| | || | || || ||||| || || ||||| |||||| Sbjct 1186 GACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAAC 1245 Query 42200 TTCCCGCTTGACCTTGCATCCGTGGA 42225 ||||| || ||| | || || || || Sbjct 1246 TTCCCTCTAGACTTAGCTTCTGTTGA 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207277713808