Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3865 545 7e-151 >seq3865 Length=1303 Score = 545 bits (604), Expect = 7e-151 Identities = 717/989 (72%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||| | ||| | ||||| ||| | |||||| | || | || |||||| Sbjct 271 TGGGCTCGTTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 330 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| | |||||||| || | | | || || | |||| || || |||||||| | Sbjct 331 GGTGTAATCATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGT 389 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||| || ||||| || ||||| || || || |||||||| || ||||| ||| | | || Sbjct 390 TGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATA 449 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||||||||| |||||||| || | |||| |||||| ||||| |||| || Sbjct 450 CGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTT 509 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | | |||||||| | | ||||| ||| | ||||| || || ||||| || Sbjct 510 CTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 569 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | |||| | ||||||| | | ||| | | || ||| |||| || ||||||||| | Sbjct 570 ATTAATCGTTTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATT 629 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 || | ||| | || ||| | || |||||| ||| ||||||||||| || || || || Sbjct 630 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGC 689 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || |||||||| ||| | |||| || | || |||||||| || || || || ||||| Sbjct 690 TGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCC 749 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || ||||| ||||| |||||||||||| | || ||||| |||||||| ||||| || Sbjct 750 TTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCT 809 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||| | |||||||| || || |||||||| || || ||||| || Sbjct 810 TATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGC 869 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGC 42936 ||||| ||| | | || || |||||| | | |||||||| |||||||||||| ||| Sbjct 870 AATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGC 929 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 || ||| ||| |||||||||||||| || || || ||||| || || || || Sbjct 930 --TAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCAC 987 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCAC 43056 ||||||||||| || | || |||||||| || || || || || ||| || || ||| Sbjct 988 GGTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 1047 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| || | || || ||||||||| || | || | ||| Sbjct 1048 TTCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACT 1107 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | || ||||| ||||| ||||||||| ||||||| ||| || | Sbjct 1108 ATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGT 1167 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || | ||||||||||| || | || ||||| ||| | || | || || |||||| Sbjct 1168 GTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 1227 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGA 43265 || || || || || |||||||| || || Sbjct 1228 GAACGTAACGCGCACAACTTCCCTCTAGA 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143525808337896