Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq3865 464 2e-126
>seq3865
Length=1303
Score = 464 bits (514), Expect = 2e-126
Identities = 700/989 (71%), Gaps = 6/989 (1%)
Strand=Plus/Minus
Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933
|| |||||||| || || ||||| || || ||||| |||||||| ||||| | || | |
Sbjct 1265 GAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAG 1206
Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993
||||| ||||| | | |||||||| || || || || | | || || |||
Sbjct 1205 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACAACT 1146
Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053
|| ||||| ||||| ||||| || ||||| || ||||| || | | ||| | || ||
Sbjct 1145 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAAGCAGTG 1086
Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113
| ||| || || | || ||||||| ||| | ||||| || | ||||| ||| ||
Sbjct 1085 AACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 1026
Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173
|| || || || |||||||| | |||||||| ||||| ||||| || || || |||
Sbjct 1025 AATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATGTTGTAT 966
Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233
|| ||||| ||||| || || || ||| || ||| | | || || |||||
Sbjct 965 GTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCA 906
Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293
|| | || || ||||| ||| |||||||| |||| ||| | || ||||| |||
Sbjct 905 CGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCACCAAAA 846
Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353
|| ||||||||||| ||| |||||||||||||| || || || ||||| |||||||||
Sbjct 845 ACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAAT 786
Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413
|||| ||| ||||| ||||||||||| ||||| | |||||| || ||| || |||
Sbjct 785 ACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAATGAACCT 726
Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473
|| |||| ||| || | |||||| ||||| ||| || | | |||||| | || ||
Sbjct 725 TGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 666
Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533
||| |||||||| | ||| |||| | | |||||| |||||| | | || ||| |
Sbjct 665 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACC--CATGT 608
Query 26534 -GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591
|| || || |||| |||||||||| | | || | ||| || || || || |||||||
Sbjct 607 AGCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 548
Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651
||||||||| | | |||||||||| | ||||| || |||| || || |||||||
Sbjct 547 ACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAG 488
Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711
| | |||| || || || || || || ||||| ||||| | ||| || || |||||||
Sbjct 487 AAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 428
Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACAT 26770
| ||||| || || || || || || || || ||||| | ||| || | || || |||
Sbjct 427 GTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAATACA- 369
Query 26771 GTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830
| || |||| | |||||| || ||||| | || || ||||| || | || | ||||
Sbjct 368 GATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAAACGG 309
Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859
|| |||||| |||| ||||||||| ||
Sbjct 308 TTTTCAGTAGAAGTAATCCACTCACAGAA 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147704804763840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |