Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3865 464 2e-126 >seq3865 Length=1303 Score = 464 bits (514), Expect = 2e-126 Identities = 700/989 (71%), Gaps = 6/989 (1%) Strand=Plus/Minus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 || |||||||| || || ||||| || || ||||| |||||||| ||||| | || | | Sbjct 1265 GAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAG 1206 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 ||||| ||||| | | |||||||| || || || || | | || || ||| Sbjct 1205 TTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCAACAACT 1146 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| ||||| || ||||| || ||||| || | | ||| | || || Sbjct 1145 GATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAAGCAGTG 1086 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || || | || ||||||| ||| | ||||| || | ||||| ||| || Sbjct 1085 AACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTG 1026 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || || || || |||||||| | |||||||| ||||| ||||| || || || ||| Sbjct 1025 AATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATGTTGTAT 966 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || || ||| || ||| | | || || ||||| Sbjct 965 GTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTTGTTTCA 906 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || | || || ||||| ||| |||||||| |||| ||| | || ||||| ||| Sbjct 905 CGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCACCAAAA 846 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || ||||||||||| ||| |||||||||||||| || || || ||||| ||||||||| Sbjct 845 ACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCTTGGAAT 786 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 |||| ||| ||||| ||||||||||| ||||| | |||||| || ||| || ||| Sbjct 785 ACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAATGAACCT 726 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCA 26473 || |||| ||| || | |||||| ||||| ||| || | | |||||| | || || Sbjct 725 TGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 666 Query 26474 ACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT 26533 ||| |||||||| | ||| |||| | | |||||| |||||| | | || ||| | Sbjct 665 ACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACC--CATGT 608 Query 26534 -GCTGC-TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATA 26591 || || || |||| |||||||||| | | || | ||| || || || || ||||||| Sbjct 607 AGCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTTGTATA 548 Query 26592 GCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAG 26651 ||||||||| | | |||||||||| | ||||| || |||| || || ||||||| Sbjct 547 ACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGCGTTAG 488 Query 26652 AGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTG 26711 | | |||| || || || || || || ||||| ||||| | ||| || || ||||||| Sbjct 487 AAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGAAACTG 428 Query 26712 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACAT 26770 | ||||| || || || || || || || || ||||| | ||| || | || || ||| Sbjct 427 GTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAATACA- 369 Query 26771 GTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGG 26830 | || |||| | |||||| || ||||| | || || ||||| || | || | |||| Sbjct 368 GATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATAAACGG 309 Query 26831 TTCTCAGTACTTGTAACCCACTCACAAAA 26859 || |||||| |||| ||||||||| || Sbjct 308 TTTTCAGTAGAAGTAATCCACTCACAGAA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147704804763840