Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq3865 722 0.0 >seq3865 Length=1303 Score = 722 bits (800), Expect = 0.0 Identities = 757/992 (76%), Gaps = 2/992 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| ||||| | |||||| |||| ||||| | || |||||||||| ||||| | | Sbjct 281 TCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATCA 340 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||| |||||| | | | || | | ||||| |||| ||| |||| || |||| Sbjct 341 TGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCTC 400 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | || ||||| || ||||| |||||||| || ||||||||||| | || |||||||||| Sbjct 401 CAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAACA 460 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 |||| ||||||||||| |||||| ||| ||||| |||||| | |||||||| || | | Sbjct 461 TCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTAT 520 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || | || |||||||| ||||| |||||||||| |||| | | || | Sbjct 521 GGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTT 580 Query 155270 TCCACTTCCTTATCGGAATCA-CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGT 155328 ||||||| | | || | | || ||| |||||| | |||||| | |||| |||| Sbjct 581 GCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCCGT 639 Query 155329 CTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCT 155388 | || |||||||| |||||| ||| || |||||||||||||| | ||||| || Sbjct 640 TTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCA 699 Query 155389 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATC 155448 || ||| | | || ||| ||||||||||||| |||||||| | |||||| | ||||| Sbjct 700 GTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTATT 759 Query 155449 TCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCC 155508 ||||||||||| |||| ||| |||| |||||||| |||||||| |||||||||||||| Sbjct 760 TCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCCA 819 Query 155509 TTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGT 155568 ||||||||| | || || || ||||| || ||||| ||| | |||||||| ||||||||| Sbjct 820 TTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGGT 879 Query 155569 TCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGT 155628 || || || |||||||| ||||||||||||| ||||| | || || ||| |||| Sbjct 880 TCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGGT 939 Query 155629 TACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGT 155688 ||| ||||| ||||| |||||||| || ||||| || |||||||| || ||||| ||| Sbjct 940 TACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGGT 999 Query 155689 CGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCT 155748 ||| | || ||||| || || || ||||||||||| | | ||||||||| | ||| Sbjct 1000 CGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 1059 Query 155749 GCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAAC 155808 || |||||||| || | |||||| |||||| | ||| | ||||| ||||| |||||| Sbjct 1060 GCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAAC 1119 Query 155809 CTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACA 155868 ||||||||||||||||||||||| || || || ||| || ||| || | || Sbjct 1120 CTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACACT 1179 Query 155869 TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCT 155928 ||||| ||||| | ||||| ||| | |||||||||||||||||||| |||||||| Sbjct 1180 TGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCG 1239 Query 155929 CACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 |||||||||||||| ||| | ||| ||| ||| Sbjct 1240 CACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584805212575120