Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3865 583 3e-162 >seq3865 Length=1303 Score = 583 bits (646), Expect = 3e-162 Identities = 729/994 (73%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 |||| | | ||| | | ||||||||||| | || ||| | || ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 || ||||| ||||| ||||| ||||| || ||||| ||||||||||| |||| ||| | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACCTAAA 1092 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | || | ||| || || || || || ||||| | | |||||||||| | ||| Sbjct 1091 GCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 1032 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||||||||| ||||| || |||| | ||||||||||||||| |||||||||||| Sbjct 1031 TTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGATG 972 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 || || || || | || ||||| || || || ||| |||||| |||| || Sbjct 971 TTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGTT 912 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || || || || | || || ||||| | |||||||| |||| || |||| |||| Sbjct 911 GTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACCA 852 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 ||||| || || ||||| || | ||| |||||||||||||| || ||||||||||| ||| Sbjct 851 CCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGCT 792 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| || | |||||||||||| || ||| || |||||||||||||| |||||||| Sbjct 791 TGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAAT 732 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 ||||| ||||||| || || | |||||| || || ||| |||| | ||| || | | Sbjct 731 GAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGAG 672 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 || || ||| |||||||| | |||||||| | | | || | |||||| | | ||| Sbjct 671 TAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 612 Query 41184 GCGTATGCTGC-TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 ||| || || || |||| ||| ||||| | || || | ||| || || || ||||| Sbjct 611 ATGTA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCACCGTT 553 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||| ||||||||| | | | |||||||| | ||||||||| |||| || || || Sbjct 552 GTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAATAGC 493 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 |||||| | || | ||||| ||||| || || ||||| ||||| | ||| || || || Sbjct 492 GTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAACCAGA 433 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || || || || || || || || ||||| | || ||||| ||||| Sbjct 432 AACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGATGAA 373 Query 41423 -ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 ||| | || || |||| ||| |||||||| | |||||||||||||| | ||||| Sbjct 372 TACA-GATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACCGATGTATA 314 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || || ||| | ||| | ||| || Sbjct 313 AACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143695400076468