Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3865 722 0.0 >seq3865 Length=1303 Score = 722 bits (800), Expect = 0.0 Identities = 737/955 (77%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||| ||| | ||| |||||||||||||| |||||||| |||||||| |||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 67413 CC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GC 67468 || |||| || | ||| | |||||| |||||||| | || || |||| | Sbjct 1211 CCTAAGTTA-GCACGGTTGATGATGTCAGCCCAAGTGTTTAATAC---ACGACCTTGAGA 1156 Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 |||||| || ||||||||||||||||||||||| |||||||| ||||||||||| | ||| Sbjct 1155 GTCAACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACC 1096 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | |||||||||||||| | || ||||| | ||||| | ||||||||| | | Sbjct 1095 TAAAGCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACG 1036 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 ||||||||||| || || || ||||| || || ||||| ||||| || |||||||| || Sbjct 1035 AGAGTTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTAC 976 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 |||||||| || ||||| ||||| ||||| |||||| ||| ||| || | || Sbjct 975 GATGTTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTC 916 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 ||| ||||| | ||| | |||||| ||||| | |||||||||||| ||| || | || Sbjct 915 AGTTGTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGA 856 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828 |||||| || ||||| || || || | ||| |||||||||||||||||||||||||| || Sbjct 855 ACCACCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTC 796 Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888 |||||||| |||| |||| |||| ||||||||||||||||| | |||||| ||||||| Sbjct 795 AGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGA 736 Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948 ||| ||||||||||||| ||| |||| ||||| || || || || | ||||| || Sbjct 735 GAATGAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGC 676 Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008 |||||| |||||| |||||| ||||||||||| | |||| |||| | |||||| | ||| Sbjct 675 AGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACG 616 Query 68009 ACCACAGTATGCTG-TGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCAC 68067 ||| ||| || | | || | | ||||||| | || | | |||| |||| |||| Sbjct 615 ACCCATGTA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCAC 557 Query 68068 CATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGA 68127 | || || |||||||| |||| || ||| |||||||| | || |||||||| | ||| | Sbjct 556 CGTTGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAA 497 Query 68128 TTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAAC 68187 | ||||| ||| |||| | ||||||||||||||||||||||||||||| | | |||| Sbjct 496 TAGCGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAAC 437 Query 68188 CTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGA 68247 | | ||| ||||| | |||||| ||||| ||||||||||| ||||||| ||| || |||| Sbjct 436 CAGAAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGA 377 Query 68248 TGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 |||| || || ||||| | |||||||||||||| | ||||| |||||||| Sbjct 376 TGAATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACC 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566918129782320