Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq3865 722 0.0
>seq3865
Length=1303
Score = 722 bits (800), Expect = 0.0
Identities = 737/955 (77%), Gaps = 10/955 (1%)
Strand=Plus/Minus
Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412
||| ||| ||| | ||| |||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212
Query 67413 CC-AAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GC 67468
|| |||| || | ||| | |||||| |||||||| | || || |||| |
Sbjct 1211 CCTAAGTTA-GCACGGTTGATGATGTCAGCCCAAGTGTTTAATAC---ACGACCTTGAGA 1156
Query 67469 GTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528
|||||| || ||||||||||||||||||||||| |||||||| ||||||||||| | |||
Sbjct 1155 GTCAACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAAACC 1096
Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588
| |||||||||||||| | || ||||| | ||||| | ||||||||| | |
Sbjct 1095 TAAAGCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACG 1036
Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648
||||||||||| || || || ||||| || || ||||| ||||| || |||||||| ||
Sbjct 1035 AGAGTTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTAC 976
Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708
|||||||| || ||||| ||||| ||||| |||||| ||| ||| || | ||
Sbjct 975 GATGTTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTC 916
Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768
||| ||||| | ||| | |||||| ||||| | |||||||||||| ||| || | ||
Sbjct 915 AGTTGTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGA 856
Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTC 67828
|||||| || ||||| || || || | ||| |||||||||||||||||||||||||| ||
Sbjct 855 ACCACCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTC 796
Query 67829 TGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGA 67888
|||||||| |||| |||| |||| ||||||||||||||||| | |||||| |||||||
Sbjct 795 AGCTTGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGA 736
Query 67889 GAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGC 67948
||| ||||||||||||| ||| |||| ||||| || || || || | ||||| ||
Sbjct 735 GAATGAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGC 676
Query 67949 AGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACG 68008
|||||| |||||| |||||| ||||||||||| | |||| |||| | |||||| | |||
Sbjct 675 AGAGTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACG 616
Query 68009 ACCACAGTATGCTG-TGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCAC 68067
||| ||| || | | || | | ||||||| | || | | |||| |||| ||||
Sbjct 615 ACCCATGTA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATTAATTGGTAAGGACCAC 557
Query 68068 CATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGA 68127
| || || |||||||| |||| || ||| |||||||| | || |||||||| | ||| |
Sbjct 556 CGTTGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAA 497
Query 68128 TTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAAC 68187
| ||||| ||| |||| | ||||||||||||||||||||||||||||| | | ||||
Sbjct 496 TAGCGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAAC 437
Query 68188 CTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGA 68247
| | ||| ||||| | |||||| ||||| ||||||||||| ||||||| ||| || ||||
Sbjct 436 CAGAAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGA 377
Query 68248 TGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|||| || || ||||| | |||||||||||||| | ||||| ||||||||
Sbjct 376 TGAATACAGATGTTGCTGTTAATAAGCAAGGAATCATGATTACACCAAACCAACC 322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566918129782320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |