Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3865 728 0.0 seq2255 558 4e-154 seq3842 107 2e-18 >seq3865 Length=1303 Score = 728 bits (806), Expect = 0.0 Identities = 768/999 (77%), Gaps = 14/999 (1%) Strand=Plus/Minus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| ||| ||| | ||| |||||||||||||| |||||||| || ||||| ||||||||| Sbjct 1271 TCAACAGAAGCTAAGTCTAGAGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 1212 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCA 67953 || || ||| ||||||| | ||| ||||| || | || ||| | ||| Sbjct 1211 CCTAAGTTAGCACGGTTGATGATGTCAGCCCAAGTGTTTAATACACGACCTTGAGAGTCA 1152 Query 67954 AGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGT-GCTAACACCAAG 68012 | | || ||||||||||||||||| || |||||||| ||||| || | ||| ||| | Sbjct 1151 ACAACTGATTGGTTGAAGTTGAAACCGTTAAGGTTGAAAGCCATAGTTGATAA-ACCTAA 1093 Query 68013 TGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGA 68072 ||||||||||||||||| | |||||||| ||||| | ||||||||| | ||||| || Sbjct 1092 AGCAGTGAACCAGATACCGATTACAGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGA 1033 Query 68073 GTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAAT 68132 ||||||||| || || || ||||| || | |||||| ||||| || || ||||| || || Sbjct 1032 GTTGTTGAATGAAGCGTATTGGAAAATTAAACGACCAAAGTAACCGTGAGCAGCTACGAT 973 Query 68133 GTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGT 68192 |||||| || ||||| ||||||||||| ||||||| ||| || || ||||||| Sbjct 972 GTTGTATGTTTCTTCCTCTTGACCGAAACGGTAACCAGCGTTAGCTGATTCGTTTTCAGT 913 Query 68193 GGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCC 68252 |||||||| | | ||||| ||||| | ||||| ||||||||| ||| | ||| || Sbjct 912 TGTTTCACGGATTAAAGAAGATGTAACTAAAGAACCGTGCATTGCAGAGAATAAAGAACC 853 Query 68253 ACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 68312 |||||| || |||||||| || | ||| ||||| |||||||| ||||||||||| || || Sbjct 852 ACCAAAAACACCAGCAACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGTTCAGC 793 Query 68313 TTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAA 68372 |||||| || | |||| ||||||||||||||||||| || | |||||| |||||||||| Sbjct 792 TTGGAATACGATCATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCGTCAGAGAA 733 Query 68373 CGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGA 68432 ||||||||||||| ||| |||| | ||| ||||| | || |||||||| |||||||| Sbjct 732 TGAACCTTGACCGATAGGGTAGATTAAGAAAACTGCAGTAGCAGCTGCAACTGGTGCAGA 673 Query 68433 GTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCC 68492 ||| || ||| |||||| ||||||||||| | ||| | || | |||||||||||| || Sbjct 672 GTAAGCTACAGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACC 613 Query 68493 CATGTATGCA-AAGATACCAATCAGGAAGTG---AAAGATTACGAGTTGGAAAGGACCAC 68548 |||||| ||| | | ||| | | |||||| || |||| | |||| ||||||||| Sbjct 612 CATGTA-GCAGCAAACACCTAATAAGAAGTGGCAAACGATT---AATTGGTAAGGACCAC 557 Query 68549 CATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAA 68608 | ||||| |||||||| || | | ||| |||||||| | || || ||||| | ||||| Sbjct 556 CGTTGTATAACCACTCGTCTAAAGATGCAGCTTCCCATACTGGGTAGAAGTGTAAACCAA 497 Query 68609 TTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAAC 68668 | || || ||| |||| | |||||||||||||||||||||||||| || | | |||| Sbjct 496 TAGCGTTAGAAGTAGGGATTACAGCACCAGAAATGATGTTGTTACCGTATAATAAAGAAC 437 Query 68669 CAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGA 68728 ||| ||| |||||||| ||||| |||||||| || || ||||| || | ||| |||| || Sbjct 436 CAGAAACTGGTTCACGGATACCGTCGATGTCAACTGGAGGAGCTGCAACGAAAGCGATGA 377 Query 68729 TGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAAC 68786 |||| |||||| ||||||| || ||| ||| ||||| | || || |||||||| | Sbjct 376 TGAATACAGAT-GTTGCTGTTAATAAGC-AAGGAATCATGATTACACCAAACCAACCGAT 319 Query 68787 GTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| | ||||| || || ||||| | ||| || ||||| Sbjct 318 GTATAAACGGTTTTCAGTAGAAGTAATCCACTCACAGAA 280 >seq2255 Length=6208 Score = 558 bits (618), Expect = 4e-154 Identities = 742/1025 (72%), Gaps = 8/1025 (1%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 |||| || || |||||||| || | ||||||||||||||||| || ||||||||||| Sbjct 1341 ATTATAGAGCGTTACCACGAGGTAATACTTCTTCTGGGAATACTAAACGTTCATGCGGTT 1282 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || || |||| ||| ||||||| ||||||||| | || ||||| || ||||||| Sbjct 1281 GGTCTTGAGCAGCCATCCAAGCACGAATACCTTCATTAAGAAGGATGTTTTTAGTGTAGA 1222 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 |||| ||||||||||||||||||||||| | || ||||| || || ||||| ||||||| Sbjct 1221 ACGTTTCGAACTCTGGGTCTTCTGCTGCACGAATTTCTTGTGAAACGAAGTCGTAAGCAC 1162 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| | || | |||||| | ||| || | |||| | ||| |||| || | Sbjct 1161 GTAAGTTTAATGCTAAACCAATTACACCAATAGCTGACATCCATAAACCAGTAACTGGTA 1102 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 | || ||||| ||||| || ||||| | || || || |||| ||| ||||| |||| Sbjct 1101 CGAATAACATGAAGAAGTGTAACCAACGTTTGTTTGAGAAAGCAACACCGAAGATTTGAG 1042 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| ||||||||||||||||| ||||| |||||||| ||||||| | || ||||| Sbjct 1041 ACCAGAAACGGTTTGCAGTAACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTGAATG 982 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| ||||| || ||||| |||||| | | || || || || ||| |||| | Sbjct 981 CACGGAATGTGTTCGCACCGTCACCGTCTTCAAATAATGTGTTTTCAACAGTAGCACCGT 922 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | | || ||| |||| | | ||| || ||||||||||| || || |||| Sbjct 921 GAATAGCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGT 862 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | | |||||||| ||||| || || | ||| | | ||| || |||||||| | || | Sbjct 861 TAAGCGTCCAGTTGTGGAACCCCTGGAAGAATAAGATGAAACGGAAGATTGCGGCAACAC 802 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| ||||| || ||||||| |||||||| | |||||| || | || || | Sbjct 801 CAAAACTAGGAGCAAAGAACCAACCTGATTGACCTAAAGGGTAAATTAAGAAAACTGAAG 742 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACG---GATACCGATGA 67242 || ||||| |||||| ||||||| |||||||| ||||| ||||| | || | ||| Sbjct 741 TGAATACAGCAATAGGAGCAGAGAATGCAATAGCGTTGTATGGACGTAAGTTAAC--TGA 684 Query 67243 GACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 |||||| | |||||| || || | |||||||||||||| | | || | ||||| | | Sbjct 683 -ACGTGCGATTTCAAATTGACGTAACATGAAACCAATTAAACCAAATGAACCGTGTAAAG 625 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAG 67362 | | |||| ||| | || |||||||| ||| || || || || |||| |||| Sbjct 624 CAATAAAAGCCCATAAACCGCCAAGTTGACACCAACGTGTAAAGTCACCTTGAGCTTCAG 565 Query 67363 GACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 ||||||| ||| | || || ||| ||| |||| || || || || || ||||| || Sbjct 564 GACCCCATAAGAATAATAA-AGAGTGAGCCATGCTATTTGCTGGTGTAGAAACAGCAGCA 506 Query 67422 GTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 || | || ||| ||| || | ||| || || | ||||| |||||||| || Sbjct 505 GTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAGCCGTGTGTGTACCAAGAAGTA 446 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| ||||||||||| | ||| ||||| | ||| | |||||| || || || | | Sbjct 445 ACAAAAGTAGTACCAGTTAACCAACCACCTACTGCGAAGTAAGCACATGGTAATAGTAAT 386 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCG 67601 | ||| |||||||| || || || || || ||| | | |||||| ||| | ||||| Sbjct 385 AATCCTGACCAACCTACGAATACGAAACGGTCTTGACGTAACCAGTCGTCAGCGTCATCG 326 Query 67602 AACCA 67606 ||||| Sbjct 325 AACCA 321 >seq3842 Length=1340 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 35506 TATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGC 35565 || |||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| | Sbjct 712 TAAAACTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGATCGCTCTAC 771 Query 35566 CGCTGAGCTACTGAGGATT 35584 | |||||||||||| |||| Sbjct 772 CACTGAGCTACTGAAGATT 790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572025067910640