Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 170 6e-37 seq1289 84.2 6e-11 >seq5 Length=471533 Score = 170 bits (188), Expect = 6e-37 Identities = 612/950 (64%), Gaps = 79/950 (8%) Strand=Plus/Minus Query 181810 ACATTGGCGTCGGGCTGGACAACCCAAACCAGCTCCTTGCAG-GGGTGATTTAAGTTGAG 181868 || ||| ||||||| || || ||||| | |||||| ||| ||||| || | | ||| Sbjct 217652 ACGTTGTCGTCGGGTTGCACGACCCAGATCAGCTCGC-GCACCGGGTGGTTGAGGGAGAG 217594 Query 181869 CTTGATCTTGTTGGAAGACGAACCAACCGACTCATCACCAGTGAACTGAAGCTGCTCAAT 181928 ||||| ||||||| | | |||||| || ||||||||||| |||||||| || Sbjct 217593 CTTGAGCTTGTTGATGGTGTTGCTGGTCGACTCGTCGCCAGTGAACTGCAGCTGCTCGAT 217534 Query 181929 CAGGTACTCGTGGGGGTTCTGCGCCATGCGGCGACGCTCATCGGTGTCAAGGAAAATGTA 181988 ||||||||||| | | |||||| | |||||| | ||| |||||||||||| | ||||| Sbjct 217533 GAGGTACTCGTGCGAGACCTGCGCGAAGCGGCGTCTCTCGTCGGTGTCAAGGTAGATGTA 217474 Query 181989 GTCAACGAACAGCGAGGC--------GGCGGCCAGCGACTGCTTGTAGGCA-TCGGTAAT 182039 ||| || || || || || || ||| || | || || || ||||| | Sbjct 217473 GTCGACAAAGAGGGATGCGCCCTTGAGGGAGCCCACGTCCGCCTGGCTCCAGTCGGTCAC 217414 Query 182040 CTTGGTGCCGGTGCCGTCAATCGCGCTGA------CAGCCCACAGGCACTCCTCAATATT 182093 | | ||||| | || | ||||| | ||||| ||| |||| | Sbjct 217413 GTAGCCGCCGGGGGCG---CTGCTGCTGACGGCTCCTGCCCAGTAGCAATCCTTGGCGTC 217357 Query 182094 GCGGATGTCAAGGTTAATCTTGACCTCGTGGTACTGAAGGGCGATGAGGGGGAGGGCAAG 182153 ||| | || ||||| | ||| ||||| |||||||| || ||||||||||| || || || Sbjct 217356 GCGCAGCTCGAGGTTGACCTTAACCTCATGGTACTGTAGCGCGATGAGGGGAAGCGCGAG 217297 Query 182154 GCCGGGATTGCGGCAATACCAGAACTGCAGGGGAACATACAGAGTGGTCTCGGGTAGGGC 182213 ||| || |||||||| ||||||||| || || | ||||| | |||| | |||| Sbjct 217296 GCCCGGGTTGCGGCAGAACCAGAACTCGAGCGGGATGTACAG---GATCTC--GCCGGGC 217242 Query 182214 ATTGCGTGGGGCGCATACCTGACGGACACCGTTGGCCGAGCAGGGACCATCAACGGCGGC 182273 | || || | || ||||| || ||| | | | Sbjct 217241 A---CG--------AT-CATGTCGGAC----GTGCCCGTGTTGTG--------------- 217213 Query 182274 GAAGGTGGGGTCGCATACGTATGTAAGCTGGGTGGTGTTACCAACCATCTTGTAGTAGCC 182333 | ||||| | | | ||| || | |||| || ||||| || |||||| Sbjct 217212 ---GTGGGGGTTG-------ACGAGAGCCGG--GATGTTGCCCACCATGTTCGCGTAGCC 217165 Query 182334 ACGCTCCTGCTCCTTGGAGAGGGTCAGCTGATTCCAGATGTGCATCCAGTCACCGTACTG 182393 ||| || | || | ||||| | ||||||| ||||| |||||| ||||| || Sbjct 217164 CAGCTGATGGCCGGCGGTTTGCGTCAGTTCGTTCCAGACGTGCAGCCAGTCGCCGTAGTG 217105 Query 182394 ACGGTCAATGCGCTGACCACCAATCTCAACCTCAACCTGCGAGATGAGCTGCTCACCTGG 182453 ||| |||||||| ||||| ||||| | |||||| | |||||| | || Sbjct 217104 CTTGTCGATGCGCTGGCCACCGATCTCGATCTCAACTGTCTTGATGAGGATGTGGCCGAT 217045 Query 182454 GAAGTCTAACCAGCGAGCGTAGACATCGCCCGAGC-TGAGCGACTGACCAATCTCTGGGA 182512 ||| | |||||| | || | | ||| ||| || || |||| || || | Sbjct 217044 CCAGTTGAGCCAGCG---GAAGGC--CCCCCCAGCGTGCACG-GTGAC----GTCCGGCA 216995 Query 182513 GAGTGATCTGTAGGTATGTGCGGTAGGCAAGGTCACCATTGCGCGAGATAGTGCAGGTTA 182572 | || | ||||| | |||| ||||| || || || ||||| ||||| |||| Sbjct 216994 GCTGGACGCGCAGGTACGCCCGGTGAATCAGGTCGCCGTTTCGAGAGATGGTGCACGTTA 216935 Query 182573 CACGACGACCGAAATCAGCCTGACCGTTGAAAGTCTGCTCAATAGACTCCATCGCGAAGT 182632 | || ||||| ||| || ||||| |||||||| || |||||||| | ||||| Sbjct 216934 CCTTCTTGCCAAAATCCGCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGT 216875 Query 182633 GGGTGTGGCGACGGTAAGTCACTTTCCAGAATGTAATCTGGGGATTACCAGTCAGGTAAA 182692 ||| ||||| ||||| ||| || | || || ||||| || || || | |||||||| Sbjct 216874 TGGTATGGCGGCGGTAGACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAA 216815 Query 182693 CATCTTGGGCCCCGTAGGCAACTAATTGCATAAGTCCTCCAGCCATTTTT 182742 || || || || ||||| || | |||||||| || || ||||| || Sbjct 216814 TGTCCTGCGCGCCATAGGCGACCAGCTGCATAAGGCCACCGCCCATTCTT 216765 Score = 123 bits (136), Expect = 7e-23 Identities = 230/335 (69%), Gaps = 27/335 (8%) Strand=Plus/Minus Query 181183 TTTGAGTAAGCTAACCCACCCATACCCGACATAATACGCAGAACGTTGTAATTGACAGCA 181242 || || |||||||| || ||||| |||||||| | ||||| || || || ||||| || Sbjct 218177 TTCGAATAAGCTAAGCCCCCCATGCCCGACATCACTCGCAGGACATTATAGTTGACTGCG 218118 Query 181243 TAGACACGGACCTTG-----------------GCAGTATTTAC--GCCCTG--GACGGTC 181281 ||||| ||||||||| | ||| || | | || |||||| Sbjct 218117 TAGACGCGGACCTTGCACGTCCTGCTCTGCGTGGAGTTGTTGATGGTCTTGTTGACGGTG 218058 Query 181282 GCGTTAGATAGGACAAGCTGCAGAGTAGCATTGTCAATACGCGAGAAATTGCAGGAACCC 181341 ||| | || || | || || ||||| || || ||||| | ||||| | || Sbjct 218057 TTGTTGGTGAGCCAGAGGTTGAGGGTCGCATTATCGATGCGCGACATGTTGCATGTTCCG 217998 Query 181342 GATGGCTGGTGCTCCTCTGGGCGT-AGCGCAAAAGAGTAGACGTTAATGCCCGAATCGGG 181400 |||||||| ||||| |||| | ||||| || ||||||||| |||||| | | | Sbjct 217997 CTGGGCTGGTGTTCCTC-GGGCTTGAGCGCGAACGAGTAGACGCAGATGCCCT--TGGAG 217941 Query 181401 GGCACGGGT--GTGGTGCTGGAAGGGCTGGACCAGGTCGAAGTAGGTGCCCTCACGCTCC 181458 || ||| |||||| ||| ||||||| || |||| ||||||| || || ||||| Sbjct 217940 GGGACGTTCTCGTGGTGTTGGTAGGGCTGCACGAGGTTGAAGTAGCGTCCGTCGCGCTCG 217881 Query 181459 GAGAAGCGGTCCTGGCCATTGAGCTGCAGCTTGGC 181493 ||||||||||| |||||||||||||| ||||| || Sbjct 217880 GAGAAGCGGTCGTGGCCATTGAGCTGTAGCTTCGC 217846 Score = 87.8 bits (96), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682 || || || || || || || || | || || ||||| | || ||||| | ||| | | Sbjct 378752 TTGACGGCGGTGTCGATGAGCCCGATGCGCCCGCCCATGGAGTGAAAGAAGAACTCGTGC 378693 Query 302683 GGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 ||| || ||| | || |||||| ||| ||||| || || ||| || ||||||| Sbjct 378692 GGTGTGAGGCCCGCGATGAAGGAGTGCTCGACGAAGCCCCGGCTCTCAGGGCCATCGTCG 378633 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTC--CAT 302800 ||||||| ||||| || ||||||| || ||| |||| || || ||||| | | | Sbjct 378632 AACTTGGGGAAGTGCGGGAGGGTCCGGTGCTCGAAGCC--ATCGGGTACGCGTCCGTTGT 378575 Query 302801 CAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | | ||||||| |||| ||||| | |||||| Sbjct 378574 CGATGGTCTGCTGCCCCACGCACGCGACCATCTG 378541 >seq1289 Length=25432 Score = 84.2 bits (92), Expect = 6e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 409294 GTGCCTCCATAGCTCAGTTGGTCAGAGCGTGCGGCTGTTAACCGCGAGGTCACCGGTTCG 409353 |||| ||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||| Sbjct 323 GTGCTTCCTTAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAAGGTCGGCGGTTCG 382 Query 409354 A 409354 | Sbjct 383 A 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471740245866374