Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3865 789 0.0 seq2255 553 2e-152 >seq3865 Length=1303 Score = 789 bits (874), Expect = 0.0 Identities = 775/995 (78%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 157878 TATTTCACTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATAC 157936 | | |||||| | | ||| | | ||| |||||||| ||||| |||||| | || | | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 157937 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 157996 |||||||||||||| || |||||| |||||| || ||||| ||||| || || || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 157997 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158056 || || ||| | |||| ||| ||||||||||||| ||||| || | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 158057 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158116 || ||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 158117 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 158176 || ||||| ||| | ||||||||||| || || ||||| ||| | |||||||| |||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 158177 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158236 || | | ||||| || || | | |||||||| ||||||| || ||| ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 |||||| ||||||||||||||||| || || |||||||| || || || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 |||||||| || |||||||||||||||||||||||||| ||||| || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416 ||||| |||||||| |||| ||||||||||| || | || | || || ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| |||||||||||||||||||| || | |||| ||| |||||||| || ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536 || ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 || ||||||||||| || ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 553 bits (612), Expect = 2e-152 Identities = 727/995 (73%), Gaps = 12/995 (1%) Strand=Plus/Plus Query 159323 AGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGC 159382 ||| || || || || || || ||||| ||| || |||| | || |||||| | || Sbjct 353 AGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATTACCATGTGCTTACTTCGC 412 Query 159383 CATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGC 159442 | || |||||| | ||||| || |||||||||| ||||||||| ||||| | || Sbjct 413 AGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTGGTACACACACGGCTTAGC 472 Query 159443 TAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGC 159502 || ||| || | || ||| |||||| | || || ||||| || || || || | Sbjct 473 TACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGTTTCTACACCAGCAAATAG 532 Query 159503 TATGGGTCATTCTCTTCTTCTACTT-TGGGGTCCTGAGTCTC-AGGGGAATTTCCAGCGG 159560 |||| ||| ||| || || | ||| ||||||||||| ||| ||| || ||| || || Sbjct 533 CATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTCAAGGTGACTTTACA-CGT 590 Query 159561 TGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATT 159620 ||||| |||||||| || |||||| |||| | || | |||||| | || | ||||| Sbjct 591 TGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGGTTCATTTGGTTTAATT 650 Query 159621 GGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCA-TTGGTATCCGTCCTTACAATGC 159679 ||||||||| | ||||| |||||| | |||||| ||| || | ||||| ||||| || Sbjct 651 GGTTTCATGTTACGTCAATTTGAAATCGCACGT-TCAGTTAACTTACGTCCATACAACGC 709 Query 159680 TATTGCGTTCTCTGGTCCTATTGCTGTTTT--TGTCAGCGTCTTCCTCATCTACCCATTG 159737 |||||| ||||||| |||||||||||| || ||| || ||| | || ||||| || Sbjct 710 TATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCA--GTTTTCTTAATTTACCCTTTA 767 Query 159738 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 159797 ||||| || ||||||| || ||||| ||||| || || |||||||| | ||| | Sbjct 768 GGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATC 827 Query 159798 TTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCT 159857 || ||| | || || || |||||||||||| | || || ||||| |||||||| |||||| Sbjct 828 TTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACATGATGGGTGTTGCT 887 Query 159858 GGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTG 159917 ||| | |||||| || || | |||| || || || | |||||| || |||||| | Sbjct 888 GGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTA 947 Query 159918 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAG 159977 | |||||| || || || || || || || || | ||||||||| || || Sbjct 948 TTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAA 1007 Query 159978 ACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCT 160037 || ||||||||||| ||||||||||| |||||||| || ||||||||| |||| || || Sbjct 1008 ACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCA 1067 Query 160038 AACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 160097 ||||| || ||| | || ||||||||||| || || || |||| ||| | |||| || Sbjct 1068 AACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCA 1127 Query 160098 TCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGATTTCGTAAGTCAAGA 160156 ||||||| | ||||| | || |||| ||| ||||||||||| ||||| ||||| Sbjct 1128 GCTATTGGTGTAATTGGTTTAGC-ATTAAACTTACGTGCTTACGACTTCGTTTCACAAGA 1186 Query 160157 GATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAA 160216 || | ||||||||||| ||||| || || || |||||||| ||||||||||| | || Sbjct 1187 AATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAA 1246 Query 160217 CGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 160276 ||||| | ||||| ||| |||| || || ||||| |||||| || | ||||| Sbjct 1247 TGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCC 1306 Query 160277 AGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||||||||||| ||| | || ||||| || |||| Sbjct 1307 AGAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548346282102640