Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3865 782 0.0 seq2255 535 5e-147 seq292 93.3 5e-14 >seq3865 Length=1303 Score = 782 bits (866), Expect = 0.0 Identities = 773/994 (78%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 150839 TTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTG 150898 || ||||| ||| |||| |||||| | |||||| | || |||||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 150899 ATGATTCCAACTCTGTTGGCAGCAACCATTTGC-TTCATCGTGGCATTCATCGCTGCTCC 150957 |||||||| | || ||||||| || || |||||| | || ||| | || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 || || |||||||| || ||||||||||| ||| |||||||| | | ||||||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 |||||| ||||||||||| | ||| ||||||||||||| ||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || ||| | || || ||| | |||||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 151138 CTTCCACTTCCTGATTGGTATCT-ATGCTTACATGGGTCGTGAGTGGGAACTGTCTTACC 151196 | ||||||| | | ||| | | ||| |||||||||||||| |||||| | |||| || Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 151197 GCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 | || ||||||||||| |||||| || || |||||||| |||||||| ||||| | || Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 |||| ||| | |||| ||| ||||||||||||| |||||||| | ||||| | |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 ||||||| || ||||||| |||| | || |||||||| || |||||||| || ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | ||||| ||| | ||||| |||||||| || ||||| || | ||||| |||||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 ||||| | ||||| ||||| | | ||||| || || |||||||| || ||| || Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTG 937 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 ||||| ||||||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct 938 GTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTG 997 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 ||||| | || |||||||||||||| |||||||| || ||||| | ||||||||| | | Sbjct 998 GTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 1057 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || |||||||| ||||||||||||||||||| | ||| | || ||||| |||| Sbjct 1058 CTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCA 1117 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 |||| |||||||||||||||||||| || | | || ||| || || | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | ||||| ||| | | |||||||| | ||||||||||| |||||||| ||||| | Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 151797 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 151830 | |||||||||||||| ||| | ||| ||| ||| Sbjct 1238 CGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 535 bits (592), Expect = 5e-147 Identities = 736/1021 (72%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGA-GACCGTTTCGTTTTTGTTGGTTGGTC 152414 ||||| |||| | || |||||| ||| | | ||||||||||| || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 379 Query 152415 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTAC 152474 ||| | | || || || |||||| | || | || |||||| | ||||| ||||| Sbjct 380 AGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 152475 TTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTT 152534 ||| | || |||||| || ||||| || || | ||| || | || || ||||| Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 152535 TCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTC-T 152593 | ||||| || |||||||| |||||| || |||| ||| ||| || | |||| | Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTAT 558 Query 152594 GGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTT 152653 |||||||||| |||||||| || || | ||| ||| || || || | ||||||| Sbjct 559 GGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 152654 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGG 152713 || | || | ||||| | || | | |||| ||||||||| | || || |||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 152714 CACGTCTCATCGGTATC---CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 152770 ||||| ||| | || | ||||| ||||| |||||||| ||||||| |||||| |||| Sbjct 679 CACGT-TCA--GTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTG 735 Query 152771 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 152830 | || | || || | || |||||| | |||||||| ||||||| || ||||| Sbjct 736 TATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTA 795 Query 152831 CTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGA 152890 ||| || || || ||||||||||| ||| | | ||| | || || ||||||||||||| Sbjct 796 GTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGA 855 Query 152891 CATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTG 152950 | | || || || || |||||||||||||| ||| |||| || | || || | | || Sbjct 856 CGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 915 Query 152951 CCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTT 153010 | ||||| |||| ||| || || || || || | | |||| ||||| || ||||| | Sbjct 916 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACAT 975 Query 153011 TCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTT 153070 || || ||| || ||||||| |||||| || || || ||||||||||| ||||||| Sbjct 976 TCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTT 1035 Query 153071 TCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGC 153130 ||||||| || || || || ||||||| || ||||| ||| | || ||||| ||| Sbjct 1036 TCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGT 1095 Query 153131 TGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCA 153190 | || ||||| |||| ||| | |||| || ||||||| | |||||| | || | | Sbjct 1096 TATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAA 1155 Query 153191 ATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTG 153250 | | ||||||||||| || || || |||||||| | || ||||||| || || || | Sbjct 1156 ACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCG 1215 Query 153251 AGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTG 153310 | |||||||| || || || |||||| | || |||||| ||||||||||| |||| || Sbjct 1216 AAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTC 1275 Query 153311 TTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTC 153370 |||||||| ||||| || || ||||| ||||| ||||| || || || ||||||| Sbjct 1276 AAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTC 1335 Query 153371 T 153371 | Sbjct 1336 T 1336 >seq292 Length=128933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 151032 CTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCT 151091 |||| || || ||||||||||||| ||| | |||||||| || | |||||||| || | Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 151092 CTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTC 151147 || | || |||||| | |||||| |||||||| |||| | || || | ||||||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549594218111440