Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq3865 686 0.0 seq2255 504 8e-138 seq292 93.3 5e-14 >seq3865 Length=1303 Score = 686 bits (760), Expect = 0.0 Identities = 754/996 (76%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||||||||| | || || ||||| || || | ||| | |||||||||||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| || || | |||| || | || ||||| | || ||| | || |||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 ||||| || |||||||| ||| | ||||||||| | |||||||| ||||| ||||||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||| |||||||||||| | || |||| ||||| || || ||||||||||| || | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | ||||||||||| || ||||| ||||||||||| ||| | || Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 72535 TTCCACTTCCTTATT-GGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 | |||||| |||||| || | | ||| |||||||||| | | |||||| |||| | | Sbjct 580 TGCCACTT-CTTATTAGGTGTTTGCTG-CTACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | |||| ||| | || ||||| |||||| ||||| ||||| || | || || || Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 |||| ||| | | || || ||||||| |||||||||||||| |||||||| |||||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 | || ||||| |||||||||||| |||| |||||||| ||||||||||| || ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | ||||| ||| |||||| || ||| | || |||||| | | ||| ||||||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCA--AAACTA 72890 |||| | ||||| || ||| ||||| | || ||||| || ||| || ||| ||| Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACGC 935 Query 72891 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950 || || ||||| ||||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 936 TGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTT 995 Query 72951 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 73010 ||| | ||||| ||||| || || ||||||||||||||||||||||||||||||||| | Sbjct 996 TGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 1055 Query 73011 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATT 73070 |||| | |||||| || || | ||||| || | | ||| | | || ||||| || Sbjct 1056 AGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTT 1115 Query 73071 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACC 73130 |||||||||||| ||||||||||||||||||||||| || | | || | || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 || |||| || | | ||| | || ||| | || |||||||| ||||| ||| | || Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 73191 TGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || ||||||||||| |||||| |||| |||| ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 504 bits (558), Expect = 8e-138 Identities = 731/1029 (71%), Gaps = 25/1029 (2%) Strand=Plus/Plus Query 73375 TGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTT 73434 ||| || |||||| ||| |||||||||||| | || ||||| || | ||||| || Sbjct 335 TGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATT 394 Query 73435 ACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATG 73494 ||| ||||||||| | ||| | || |||||||| || |||||||| || || || || Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 73495 GTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGT 73554 ||||||||| || | || | || || | || || || || |||||||| || || Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 73555 ATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACA 73614 || ||||| | || |||| ||| | |||| ||| | ||||| || || || || Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCTTTATTATTCTTATGGGGTCCTGAAGCTCA 574 Query 73615 AGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGG 73674 ||| || || ||| |||| |||| | || || ||||| ||| | || ||||| || Sbjct 575 AGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACGG 634 Query 73675 AGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGAT 73734 ||||| | || ||||||||| | | || ||||| || ||| | ||| | Sbjct 635 TTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACTT 694 Query 73735 ACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTC- 73793 |||||| |||||||| | || || || || ||| || |||||||| || |||| Sbjct 695 ACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCAC-TTCAGTTTTCT 753 Query 73794 TAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAA 73853 |||| || |||||||| || |||||||||| || ||| || ||||| || |||| Sbjct 754 TAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGCAA 813 Query 73854 TCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATA 73913 |||| |||| || |||||| | ||||| |||||||| || ||||| ||||| || | Sbjct 814 TCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCACA 873 Query 73914 TGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAG 73973 |||||||||| || ||| | | |||| || ||| ||||||| || || ||||| || | Sbjct 874 TGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTG 933 Query 73974 TACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAA 74033 | | |||||||| | ||||| || ||| ||| || || | Sbjct 934 TTGAAAACACATTATTTGAAG------------ACGGTGACGGTGCGA--------AC-A 972 Query 74034 CTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACA 74093 | ||| | |||||| | || || || | |||||| || || |||| ||||||| ||| Sbjct 973 CATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACC 1032 Query 74094 GATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTA 74153 | |||||||| || || || ||| | || || ||||||||| | | ||||||||| | | Sbjct 1033 GTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCA 1092 Query 74154 TGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCAC 74213 |||| |||||||| || | ||| | |||| ||| |||| ||| | | ||| ||||| Sbjct 1093 TGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCA- 1151 Query 74214 TTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAG 74272 |||| |||| | || |||||||| || || ||||| || | |||||||||||||||||| Sbjct 1152 TTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAG 1211 Query 74273 TTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCA 74332 || ||||| ||||||||||| ||||| ||||||||||||||||| | || |||||| | Sbjct 1212 TTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCT 1271 Query 74333 TCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAAC 74392 || || ||||| ||||| || || |||||||||||||| || || || || ||| Sbjct 1272 GCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAAC 1331 Query 74393 GCACTATAA 74401 || |||||| Sbjct 1332 GCTCTATAA 1340 >seq292 Length=128933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 72428 CTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCA 72487 ||||||| ||| |||| ||||| || || ||||||||||| || | |||||||| || Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 72488 CTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTA 72547 || | ||||| ||||| || ||| | |||||| |||| ||||| | | |||||| |||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTA 40673 Query 72548 T 72548 | Sbjct 40672 T 40672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572844225906160