Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq879 127 2e-24 seq12 127 2e-24 seq83 86.0 6e-12 >seq879 Length=48288 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || ||||| || || || || || || | | Sbjct 3808 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCT 3867 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || || || Sbjct 3868 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3927 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||||||| | | | || | || || ||| Sbjct 3928 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAAC 3987 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 3988 ATTCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 4035 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || | | Sbjct 2508 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCT 2567 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || || || Sbjct 2568 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2627 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || ||||| || |||||||||||| | | || | || || ||| Sbjct 2628 CAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAAC 2687 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| |||| || ||| Sbjct 2688 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGGC 2735 >seq12 Length=425388 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || || || || || | | Sbjct 401068 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 401009 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||||||||| || || || || ||||| || Sbjct 401008 GACACCATTGACAACGTCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCAG 400949 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || |||||||||||| | | || | || || ||| Sbjct 400948 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400889 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||| ||| Sbjct 400888 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400841 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || ||||| || || || | | Sbjct 401296 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401237 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || || || Sbjct 401236 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 401177 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || |||||||||||| | | || | ||||| ||| Sbjct 401176 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAAC 401117 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||| ||| Sbjct 401116 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGTGGC 401069 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | | Sbjct 401992 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401933 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 401932 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 401873 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || |||||||||||| | | || | || || ||| Sbjct 401872 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACACTGGCTGACTACAAC 401813 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||| ||| Sbjct 401812 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 401765 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || || || || || || || | | Sbjct 400612 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 400553 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 400552 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 400493 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || |||||||||||| | | || | || || ||| Sbjct 400492 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400433 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||||||| |||| ||||||| || Sbjct 400432 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400386 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || || || || | | Sbjct 400840 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 400781 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || ||||| || Sbjct 400780 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 400721 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || |||||||||||| | | || | || || ||| Sbjct 400720 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400661 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| ||||||| ||| Sbjct 400660 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGGC 400613 >seq83 Length=234864 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || || || || ||| | |||||||| || || |||||||||||| | Sbjct 63221 AGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTGGAGGATGGCCG 63280 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || | || || |||||||| ||||| || ||||| ||| ||||| |||| |||| Sbjct 63281 CACCCTGGCTGACTACAACATTCAGAAGGAGTCAACACTGCACCTGGTGCTGCGCCTGCG 63340 Query 24925 CGGAGGC 24931 ||| ||| Sbjct 63341 CGGTGGC 63347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449874531500560