Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq879 143 2e-29 seq12 134 9e-27 seq83 82.4 5e-11 >seq879 Length=48288 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 2720 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATC 2661 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||| ||||| || |||||||| | || | ||||||||||| Sbjct 2660 CTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2601 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | ||| || |||| || ||||| Sbjct 2600 CTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGT 2541 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||||||||||||| Sbjct 2540 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2507 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| ||||| | ||| |||| |||| Sbjct 4020 CAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC 3961 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 3960 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 3901 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | ||| || |||| || ||||| Sbjct 3900 CTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGT 3841 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || ||||| || |||||||||||| Sbjct 3840 TTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 2492 CAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATC 2433 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||||| ||||| ||||||||||| || || |||||||| Sbjct 2432 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 2394 >seq12 Length=425388 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| | || |||| |||| Sbjct 400856 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400915 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 400916 CTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400975 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | |||||| |||| ||| ||||| Sbjct 400976 TTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGT 401035 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||| ||||||||| Sbjct 401036 CTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| || || | || |||| |||| Sbjct 401084 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATC 401143 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || ||||||||| | || | ||||||||||| Sbjct 401144 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 401203 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | |||||| |||| || ||||| Sbjct 401204 CTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGT 401263 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| || || ||||||||| Sbjct 401264 CTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 401780 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATC 401839 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 401840 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 401899 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | |||||| |||| || ||||| Sbjct 401900 CTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGT 401959 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||||||||||||| Sbjct 401960 CTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 401993 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 400400 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400459 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 400460 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400519 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | ||| || |||| ||| ||||| Sbjct 400520 CTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGT 400579 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| ||||| ||||||||| Sbjct 400580 CTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 129 bits (142), Expect = 4e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 400628 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400687 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 400688 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400747 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || |||||| | || | ||| | |||||| |||| ||| ||||| Sbjct 400748 CTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGT 400807 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| || || ||||||||| Sbjct 400808 CTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 86.0 bits (94), Expect = 4e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 402008 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 402067 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 ||||| ||||| |||||||||||||| || ||||||||| Sbjct 402068 CTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCT 402107 >seq83 Length=234864 Score = 82.4 bits (90), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| ||||| | ||| |||| |||| Sbjct 63332 CAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC 63273 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 ||||| ||||| || || ||||| || || ||||||||| Sbjct 63272 CTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCT 63233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676517599138