Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq879 107 2e-18 seq12 98.7 8e-16 >seq879 Length=48288 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||||||||| || | || ||| || Sbjct 3808 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCT 3867 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 3868 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3927 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||| | | || |||| ||||||||| Sbjct 3928 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAAC 3987 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||||||| ||||| ||||| || | |||| || || Sbjct 3988 ATTCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 4034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| || | || ||| || Sbjct 2508 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCT 2567 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 2568 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2627 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||||||||| | | || |||| ||||||||| Sbjct 2628 CAGCGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAAC 2687 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||||||||| ||||| ||||| || | |||| || || Sbjct 2688 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGTGGTGG 2734 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||| | || |||| |||||| || ||||||||||| | | || |||| || Sbjct 3693 GGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGA 3752 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| || |||||||||||| ||||| ||||| || | |||| || || Sbjct 3753 CTACAACATCCAGAAGGAGTCTACGCTGCACCTGGTGCTGCGCCTGCGCGGTGG 3806 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||| | || |||| |||||| || ||||||||||| | | || |||| || Sbjct 3163 GGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGA 3222 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| || ||||||||||| ||||| ||||| || | |||| || || Sbjct 3223 CTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGCCTGCGCGGTGG 3276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| ||| || ||| | || || | ||||| || ||||||||||| | | Sbjct 4545 AGGCATTCCCCCGGACCAACAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCG 4604 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 || |||| ||||||||||| || |||||||| ||| ||||| ||||| || | |||| Sbjct 4605 CACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCG 4664 Query 107777 AGGGGGAAA 107785 || ||||| Sbjct 4665 TGGCGGAAA 4673 >seq12 Length=425388 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 400612 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 400553 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||||| || || || || | ||| || ||| Sbjct 400552 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 400493 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||||||||| | | || |||| ||||||||| Sbjct 400492 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400433 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 400432 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400386 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || ||||| ||||| ||| | || ||| | Sbjct 401068 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 401009 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||||| || || || || | ||| || ||| Sbjct 401008 GACACCATTGACAACGTCAAGCAGAAGATCCAAGACAAGGAGGGTATCCCCCCCGACCAG 400949 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||| ||||||||| Sbjct 400948 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400889 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||||||| ||||| ||||| || | |||| || || Sbjct 400888 ATCCAGAAGGAGTCTACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400842 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || | || ||| | Sbjct 401992 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401933 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || ||||| || || || || | ||| || ||| Sbjct 401932 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 401873 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||||||||| | | ||| |||| ||||||||| Sbjct 401872 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACACTGGCTGACTACAAC 401813 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 401812 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 401766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| | || ||| | Sbjct 400840 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 400781 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || ||||| || || || || | ||| || ||| Sbjct 400780 GACACCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 400721 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||||||||| | | || |||| ||||||||| Sbjct 400720 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGACTACAAC 400661 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 400660 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGCGG 400614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| || | || ||| | Sbjct 401296 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCT 401237 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || ||||| || || || ||| | ||| || ||| Sbjct 401236 GACACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 401177 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||| || |||||| Sbjct 401176 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAAC 401117 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 401116 ATCCAGAAGGAGTCCACGCTGCACTTGGTGCTGCGTCTGCGCGGTGG 401070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398856858902278