Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq3865 753 0.0 seq2255 540 1e-148 >seq3865 Length=1303 Score = 753 bits (834), Expect = 0.0 Identities = 767/995 (77%), Gaps = 14/995 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| |||||| | ||||| || | |||||||| || | |||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 157111 ATGATTCCAACATTGCTTG----CAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAG 157165 |||||||| |||||| ||||||| ||||| ||||| | || ||||| |||| Sbjct 340 ATGATTCC----TTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAG 394 Query 157166 CACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCA 157225 | ||||| ||||| ||||||||||| || ||||||||| |||||||| | | || || | Sbjct 395 CTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTA 454 Query 157226 ACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACC 157285 |||||||||| |||||||| || | ||| |||| ||||| || ||| | |||||||||| Sbjct 455 ACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACC 514 Query 157286 CCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGG 157345 | | |||||||| ||||| | || |||||| | |||||||||||||||| |||| | Sbjct 515 CAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAA 574 Query 157346 TAGTCTTTCACTTCCTGATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTTTC 157403 | || | |||||| | | || | | ||| ||| ||||| ||||| |||||| | || Sbjct 575 TCGTTTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATC 632 Query 157404 TTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGC 157463 || ||||||||||||||| || |||||| ||| || ||||| |||||||| || ||||| Sbjct 633 TTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGC 692 Query 157464 GAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCT 157523 | |||||| ||| | |||| ||| ||||||||||||| ||||| || | ||||||| | Sbjct 693 TACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTT 752 Query 157524 TGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTAT 157583 ||||| ||||||||||| |||| ||| |||| ||||| || || ||||| || ||||| Sbjct 753 AGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTAT 812 Query 157584 GCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTAT 157643 ||| || ||||||||| | || |||||||| || || ||||| ||||| |||||||| || Sbjct 813 GCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAAT 872 Query 157644 GCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAA 157703 |||||| | | ||||| || || | | |||||||||||||||| || ||| || Sbjct 873 GCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAA 932 Query 157704 CTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTA 157763 | ||||||| ||||||||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 933 CGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTA 992 Query 157764 CTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTT 157823 ||| ||||| | || |||||||||||||||||||||||| | | |||||||| Sbjct 993 CTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTT 1052 Query 157824 CCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGC 157883 | | || || |||||||| |||| |||||||||||||| | || || || ||||| Sbjct 1053 CTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGC 1112 Query 157884 ATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTT 157943 |||||||| |||||||||||||||||||| || | |||| ||| |||||||| || Sbjct 1113 TTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATT 1172 Query 157944 GAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCG 158003 ||||| ||||| || || | ||||| ||| | ||||||||||| ||||| || || Sbjct 1173 AAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACG 1232 Query 158004 TAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158038 |||||| ||||||||||| || || | ||| ||| Sbjct 1233 TAACGCGCACAACTTCCCTCTAGACTTAGCTTCTG 1267 >seq2255 Length=6208 Score = 540 bits (598), Expect = 1e-148 Identities = 729/1005 (73%), Gaps = 14/1005 (1%) Strand=Plus/Plus Query 158787 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTA 158846 ||||||||| | | || |||||||| || || || ||||| ||| | | || || Sbjct 336 GACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGATTATTACTATTA 395 Query 158847 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 158906 || |||||| | || | || |||||| | ||||| || ||||| | ||| ||| Sbjct 396 CCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTGG 455 Query 158907 TATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTT 158966 || ||||| || | |||||||| || | || ||| ||||| | || || || ||| Sbjct 456 TACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGTT 515 Query 158967 TCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTC-TGGGGTCCTGAGGCTCA 159025 || || ||||| || |||| ||| ||| || | |||| ||||||||||| ||||| Sbjct 516 TCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTCA 574 Query 159026 AGGGGATTTCGTCAGGTGGGTC-CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 159084 ||| || || || || ||| |||||||| || | ||| |||| | || | |||| Sbjct 575 AGGTGACTTTA-CACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACG 633 Query 159085 GTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTA 159144 || | |||| |||||||||||||| | || || |||||| | |||||| ||| | || Sbjct 634 GTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGT-TCA--GTTA 690 Query 159145 TC---CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT--TGTCAGCGT 159199 | ||||| ||||| |||||||| ||||||| |||||||||||| || ||| || Sbjct 691 ACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCA--GT 748 Query 159200 CTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 159259 ||| | || ||||| | ||||| || ||||||| || ||||| ||||| || || Sbjct 749 TTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGC 808 Query 159260 CGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTT 159319 |||||| ||| | ||| | | ||| | || ||||||||||| ||||| || ||||| || Sbjct 809 CGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATT 868 Query 159320 CCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGT 159379 ||| |||||||| ||||||||| | |||||| || | ||| ||||||||| || | Sbjct 869 CCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGC 928 Query 159380 CACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGA 159439 || |||||||| ||||||| || || || || || ||||| || || || | Sbjct 929 TACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAA 988 Query 159440 TTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 159499 ||||||||| || || || || |||||||| ||||||||||| |||||||| || || Sbjct 989 CCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAAT 1048 Query 159500 CTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGT 159559 |||||| |||| || || ||||| || ||| | || ||||| ||||| || || || || Sbjct 1049 CTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGT 1108 Query 159560 TATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTA 159619 || ||| |||||| || |||||| | |||||| | || | || | |||||||| Sbjct 1109 TACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTA 1168 Query 159620 CGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACAC 159679 ||| ||||| ||||| || | ||||||||||| ||||| || |||||||||||||| Sbjct 1169 CGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACAC 1228 Query 159680 CAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCA 159739 || ||||| ||||| |||||||| | ||||||||| |||| || || ||||| || Sbjct 1229 TAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCA 1288 Query 159740 TGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||| || | |||||||||||||| |||| | |||||||| Sbjct 1289 TGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGC 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545245641096160