Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3865 731 0.0 seq2255 544 1e-149 seq721 104 3e-17 >seq3865 Length=1303 Score = 731 bits (810), Expect = 0.0 Identities = 754/980 (77%), Gaps = 5/980 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 |||||||| | || ||||||| ||||| |||||| |||| ||||| || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || ||||||||||| ||||||||||| || ||||||| | | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 |||||| |||||||| || | || |||| ||||| |||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 177857 CTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATACC 177915 | |||||| | | || | | ||| || ||||| ||||| |||||| | || | || Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 177916 GTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCG 177975 || |||||||||| || |||||| ||| || ||||||||||| |||||||| || | | Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 177976 CAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 |||| || || |||| ||| ||||||||||||||||||| || | ||||||| | |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| |||| | ||||||||||| |||||||| ||||||||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | ||||||||| | ||||||||||| || || ||||| ||| | |||||||| ||||| | Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | | ||||| ||||| | ||||||| || || |||| || || ||| || Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTG 937 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 ||||| ||||| ||||| ||||||||||| |||||||| || || || |||||||| | Sbjct 938 GTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTG 997 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 ||||||| || |||||||| || || ||||||||||| |||||| | ||||||||| | | Sbjct 998 GTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 1057 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || ||||||||| | || ||||||||||| || | ||| |||| || ||||| || | Sbjct 1058 CTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCA 1117 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| || || |||||||||||||| || | | ||| ||||| ||||| | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | ||||| ||| | |||||||||| | || |||||||| ||||||||| | || Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA-C 1236 Query 178516 GCACATAACTTCCCGCTTGA 178535 || || |||||||| || || Sbjct 1237 GCGCACAACTTCCCTCTAGA 1256 >seq2255 Length=6208 Score = 544 bits (602), Expect = 1e-149 Identities = 744/1028 (72%), Gaps = 12/1028 (1%) Strand=Plus/Plus Query 178936 TGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCT 178995 |||||||||| | || |||||| | || || || || || || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 178996 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179055 ||| | |||| | || |||||| | || | || |||||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 179056 TTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTT 179115 |||||||| ||||||||| || || | |||| ||| || | |||||| |||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 179116 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 179174 | || || ||||| || || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 179175 GGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATT 179233 ||||||||| |||| || || ||| || || ||||| |||||||| || ||||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACA-CGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 179234 TCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGG 179293 | | ||| | |||||| | || | ||||||| |||||| | ||||| |||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 179294 CACGTCTCATCGGTATC---CGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCG 179350 ||||| ||| | || | ||||| ||||| || ||||| || ||| ||||||||| | Sbjct 679 CACGT-TCA--GTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTG 735 Query 179351 TATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCAT 179410 ||||| | || || | || ||||| | || ||||| ||||||||||||| || Sbjct 736 TATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTA 795 Query 179411 CGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGA 179470 ||||||||||| || ||||| | ||| | | ||||| || || ||||||||||||| Sbjct 796 GTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGA 855 Query 179471 CACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTG 179530 | || ||||| || ||||||||||| ||||| ||| | | |||| |||| | | | || Sbjct 856 CGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 915 Query 179531 CTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT 179590 ||||||| || | ||||| || || ||||| | |||||| || || || ||||||| Sbjct 916 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACAT 975 Query 179591 TTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTT 179650 | || ||| || | || |||| || || || || ||||||||||| || ||||||| Sbjct 976 TCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTT 1035 Query 179651 TTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGC 179710 | ||||| || |||||||| ||| | || || || |||||||| |||||||| | | Sbjct 1036 TCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGT 1095 Query 179711 TGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTA 179770 | || || || || | ||| | ||| | || ||||||| | ||||| |||| ||| Sbjct 1096 TATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGC-ATTA 1154 Query 179771 ATCTT-CGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTC 179829 | ||| |||||||| || || || ||||| || | ||||||||||| || |||||| Sbjct 1155 AACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTC 1214 Query 179830 GAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCT 179889 || |||||||| || || ||||| ||||| |||||||| | ||||||||| |||| || Sbjct 1215 GAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCT 1274 Query 179890 GCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCA 179949 || ||||| |||||| || | |||||||||||||| ||||| |||||||||| Sbjct 1275 CAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCT 1334 Query 179950 CTGTGATT 179957 || | ||| Sbjct 1335 CTATAATT 1342 >seq721 Length=61483 Score = 104 bits (114), Expect = 3e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 138559 GAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGT 138618 || || || ||||| || |||||||| || ||||| ||||| || || | ||| ||||| Sbjct 39573 GAGGCTGGCATTGACCTGCCCTACTCTTGCCGTGCCGGTGCCTGCTCAAGCTGCGCTGGC 39632 Query 138619 AAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATT 138678 || | | | || || || || |||||||||||||| ||||| ||||||| ||| ||| Sbjct 39633 AAGGTCGAGGCCGGCACCGTCGACCAGTCTGACCAGTCCTTCCTGGATGATGGCCAGATT 39692 Query 138679 -GCAGCAGGATTTATCATGACTTGCGTAGCATACCCCAC 138716 ||| | || || || |||| ||||| || |||||||| Sbjct 39693 GGCAAC-GGCTTCGTCCTGACCTGCGTTGCGTACCCCAC 39730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605636144414320