Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12 158 1e-33 seq135 152 5e-32 seq879 138 1e-27 seq2 131 2e-25 >seq12 Length=425388 Score = 158 bits (174), Expect = 1e-33 Identities = 156/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || ||| |||| | | | ||||| ||||||||||| Sbjct 400644 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 400702 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| ||||| || |||||||| |||||| ||||| Sbjct 400703 CGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTT 400762 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | ||||| ||| ||||| ||||| || Sbjct 400763 GACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 400822 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 400823 CTTGACGAAAATCTGCATG 400841 Score = 154 bits (170), Expect = 1e-32 Identities = 155/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || ||| |||| | | | ||||| ||||||||||| Sbjct 400416 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 400474 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| ||||| || |||||||| |||||| ||||| Sbjct 400475 CGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTT 400534 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | ||||| ||| ||||| ||||| || Sbjct 400535 GACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 400594 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 400595 CTTGACAAAAATCTGCATG 400613 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || ||| |||| | | | ||||| ||||||||||| Sbjct 400872 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 400930 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| ||||| || |||||||| |||||| ||||| Sbjct 400931 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGGATCTTCTGCTT 400990 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | ||||| ||| ||||| ||||| || Sbjct 400991 GACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 401050 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 401051 CTTGACAAAAATCTGCATG 401069 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || |||||||| ||| |||| | | | ||||| ||||||||||| Sbjct 401100 GTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGCC 401158 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || ||||| |||||||| |||||| ||||| Sbjct 401159 GGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTT 401218 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | |||| ||| ||||| ||||| || Sbjct 401219 GACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTGCCAGTCAGGGT 401278 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 401279 CTTGACGAAAATCTGCATG 401297 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || ||| ||| | | | ||||| ||||||||||| Sbjct 401796 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCA-TCCTCCAGCTGCTTGCC 401854 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| ||||| || |||||||| |||||| ||||| Sbjct 401855 CGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTT 401914 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | |||| ||| ||||| ||||| || Sbjct 401915 GACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTGCCAGTCAGGGT 401974 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 401975 CTTGACAAAGATCTGCATG 401993 >seq135 Length=196152 Score = 152 bits (168), Expect = 5e-32 Identities = 823/1287 (64%), Gaps = 60/1287 (5%) Strand=Plus/Minus Query 148327 ACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCG 148386 ||||| |||||||| |||||| | ||| |||||||||||||| |||| ||| |||| Sbjct 155257 ACTCGCAGTTGCCCAGAATCTGTGAGGTGCTTGCCGTGGGCATGAGCGCTGTCAGGAGCG 155198 Query 148387 AGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCG--- 148443 |||||||| |||| | | | || ||| || ||||| ||||| || Sbjct 155197 AGTTGCGCGCCCCGCACTCGCGCAGTCTGGCCTTGGTGGCGGCCCAATCCCACCGCCCGC 155138 Query 148444 ----GCG-ACG--GTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCT-AGCGGG 148495 ||| ||| | | ||| || || ||| |||| | |||| || | |||| Sbjct 155137 TGAAGCGCACGTCGGGCCACTCGCC-CAGATCGAACTGGACGCTGCCTTGGGAGAACGGG 155079 Query 148496 GCTGCCCTCGTAC-GAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGA 148554 | ||||| | || | || ||| || || | | || || || ||| |||| || | Sbjct 155078 GA-GCCCTGGAACCGCGC-GTATGGCCCCTCCCGTGCAGCAAGCTCGACCGTCGCTTCCA 155021 Query 148555 GCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTT 148614 |||||||| ||| || ||||| || ||| || |||| | || | ||| || Sbjct 155020 TCGCGCCGTGGTAGATGGTCTCCATGATGTGCGCGTCGAGCGACAGGGCTGCATCGTCTT 154961 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 |||||| || || ||| | || ||| | || ||||| | ||| | | |||| Sbjct 154960 CGTACGCCAGGCGGAGCAGGCAGTACAGATCGCCCAGCCCCTGGATGCCTATTTCGATGG 154901 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG---GATAGTGGTTGCGGTCGA 148731 | || | | ||||||| ||||||| ||||| ||| |||| ||||||||||| Sbjct 154900 GGCGCATGTCCAGGTTGGAG--GCGCGCG-TCTCGGGCGTGGGATACATGTTGCGGTCGA 154844 Query 148732 TGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCA--GCAATTCAAAATC 148789 |||| |||| || ||| ||| | ||| | | | | ||| || | |||| || Sbjct 154843 TGATTTTGTTGAGGTTGATGGTCACGAGCTTGGCAGTGTCGTGCAAGGCCA--CAAAGTC 154786 Query 148790 GTACTTGTCATCTACGATGCATC--------GGTTCACGGCGATAGAGGCTAGATTGCAC 148841 |||| ||| | ||| ||||| | || || ||||| || ||||| ||||| Sbjct 154785 GTAC--GTCTGCGACGCAGCATCCCAGAACCGATTGACAGCGATCGACGCTAGGTTGCAT 154728 Query 148842 ACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTG 148901 || || | || || | | |||| ||| ||||| ||||| |||||| | ||| Sbjct 154727 ACCGCATACGTATGTTGGTCTGAGAACTCGGTGATTTCGGCACACAGGTTGCTGGACTTG 154668 Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG-TCCTTGTACAGCATGTA 148960 || |||||||||| || |||||||||| |||| ||| | |||||||| || ||||| Sbjct 154667 ATTGTGCCCACGTTCGCGTGGTTGCTCTTGCGGTTG-ACGTGGTCCTTGTATAGGATGTA 154609 Query 148961 CGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCAC 149020 || ||||||||| | | | | | | | | | |||| |||| || Sbjct 154608 GGGCGTGCCAGTTTCGATGAGGCTCTTGAGGACGTGCTGCCACAGGG--TGCGTGCCGGA 154551 Query 149021 TTGCTGCTCGT--AGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCT-----CGAACG 149073 || || ||| | | ||| | | ||||| | || ||| ||| || | | Sbjct 154550 AGGCGGCGCGTGAACTGGCCCGCGGCCACGTATCGGGCGTAGAGC-GCTGTAAACGCAGG 154492 Query 149074 CCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGC-ACATGAGCGACCACACG 149132 || | | | || | ||| || ||||| || ||||| ||||||| |||| | Sbjct 154491 CCCCACGGCGTCAGT----GAGGCCTGGGCAGCGGT-CGGGCGACATGAGGAACCAGTCC 154437 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 |||| | | |||||| ||| ||| ||||||||||| || || | ||||||| Sbjct 154436 TCGTCGTCATGCACGCGGCGCATGAACTCGTCGGGCACCCACAGTGCCAGGAAGAGGTCG 154377 Query 149193 CGCG-CCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA-ATATGT 149250 |||| || | |||| ||||||| |||| | || | | | || || | | || Sbjct 154376 CGCGTCCGCTCCGTCT-CGGCGCCTGTGTTCTGTCGTAACTCCA-CAAACTCCCACACGT 154319 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCCCTGGTCGA 149310 | |||||||| ||||| | ||||||||||| || ||||||||||||||| |||| | Sbjct 154318 CGGCGTGCCATGGCTCCAAGTACACCGCGATCGAGCCCTTGCGCTTGCCCGATTGGTTGC 154259 Query 149311 CGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGT 149370 | || | | | ||| ||||| | ||| || | ||||| || ||||| Sbjct 154258 AATACCGTGCGGTCTCGTTGAACACCTTGAGCATGGGCACGATGCCGTCGGACCGGCCGT 154199 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 | || | ||||| ||| || || | ||| |||| || |||||||||| Sbjct 154198 TGGTGCTCATGATGCGCGAGCCCTTGGCACGGATGTTGCTGACGTGCACACCGATGCCGC 154139 Query 149431 CGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGT 149490 | | |||| |||||| ||| | |||| | || | |||| || |||||||||| Sbjct 154138 CAGCCCACTTGGAGATGCGCGCACTGTCGGATATGGTTTTGAAGATACCATCGATGCTGT 154079 Query 149491 CGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550 || | | || ||||||||||||||| |||| ||| |||||||| || | Sbjct 154078 CG---TGCGTGCCCAGCAGAAAGCACGACGACATCTGCTCGTGCCGCGTGCCTGCGTTAA 154022 Query 149551 ACATGGTGGGGCTGGCGTGTGTAAAAT 149577 | | || ||||||||||| ||||||| Sbjct 154021 AGAGCGTCGGGCTGGCGTGCGTAAAAT 153995 >seq879 Length=48288 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 2705 GGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 2647 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 2646 CGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCT 2587 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | ||| || || | |||| ||| ||||| ||||| | Sbjct 2586 TGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGG 2527 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2526 TCTTCACAAAGATCTGCATG 2507 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || ||| ||| | | | ||||| ||||||||||| Sbjct 4004 GTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 3946 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| || || ||||| |||||||| |||||| ||||| Sbjct 3945 GGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTT 3886 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | |||| ||||||||| ||||| || Sbjct 3885 GACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGGTTTTGCCAGTCAGCGT 3826 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 3825 CTTGACGAAGATCTGCATG 3807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 2477 GGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 2419 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 | ||| | ||||| ||||||||||| || || |||||| Sbjct 2418 CGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCT 2381 >seq2 Length=533353 Score = 131 bits (144), Expect = 2e-25 Identities = 161/216 (75%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 |||||||| ||||||||||| |||||||||||| ||||||| ||||| ||||| ||| Sbjct 425325 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCACGCGTAAAAGTGCAGCGAG 425384 Query 148011 GACATGAGCGTG--TACGTCGGGTGCG-GCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||||| || | || ||| || || |||| || ||||||||||||||||| Sbjct 425385 G---TGAGCTTGCCGAAGTTGGGGTCGCTCATGAACACGTTGAACGACTGGCTCTGGTCG 425441 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAG---TCGCTTTATCTTCATCTCCCAG 148124 ||| ||||||| ||||| || ||||| || | || |||| ||| ||||||||| Sbjct 425442 ATGTACGCGCCGCGGTCCGCCGCCATGTCCACCAGCGTGCGCT---GCTTGATCTCCCAG 425498 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATG 148160 |||||||||| ||| ||| | | ||||| ||| Sbjct 425499 ACCGTCTTGTAGAGCGCCTTTAGGTTGTCGGGGATG 425534 Score = 105 bits (116), Expect = 6e-18 Identities = 126/168 (75%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 149150 CTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC-CTTGCAGTCTT 149208 || ||| || || ||||| | ||| |||||||| | |||||||||||| | || || | Sbjct 428612 CTCCATGAATAGGTCGGGGATCCACAGCGCGTAGAAGAGGTCGCGCGCGCGCGCC-TCCT 428670 Query 149209 CGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAA 149268 | ||| ||| |||||||| ||| | | || | ||| | |||||| ||||||| Sbjct 428671 CCTTGCCGTGGTTCTTGCGCAGGTCGAGGAAGTCAAACACGTCAGAGTGCCAGGGCTCAA 428730 Query 149269 TGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCCCTGGTCGACGT 149313 |||||| |||| ||||||||||||||| |||||||||||| |||| Sbjct 428731 TGTACATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGT 428778 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 |||| ||||| | ||||||||||||||| ||||||||| |||| ||| |||| | | Sbjct 426897 CCTGCACGCCGAGGCCAATGGGCCGGTGGCGCATGTTGGAGCGGCGGGCGGTCTCCACTG 426956 Query 148714 GATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGC 148751 ||||||||||| |||||| ||||||| || |||||| Sbjct 426957 GATAGTGGTTGACGTCGATAATCTTGTTGAGGTTGCGC 426994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483396012598480