Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 367 3e-96 >seq5 Length=471533 Score = 367 bits (406), Expect = 3e-96 Identities = 564/803 (70%), Gaps = 46/803 (6%) Strand=Plus/Minus Query 96896 GACTCGTCACCAGTGAACTGAACCTGCTCGATGAGGTACTCGTGCGAGACCTGCGCGAAG 96955 |||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 217565 GACTCGTCGCCAGTGAACTGCAGCTGCTCGATGAGGTACTCGTGCGAGACCTGCGCGAAG 217506 Query 96956 CGGCGACGCTCATCAGTGTCAAGGAAGATGTAGTCGGCGTAGAGAGACGCGGCCTCGAAC 97015 ||||| | ||| || ||||||||| ||||||||||| | |||| || ||| ||| || Sbjct 217505 CGGCGTCTCTCGTCGGTGTCAAGGTAGATGTAGTCGACAAAGAGGGATGCGCCCTTGAGG 217446 Query 97016 GAGGGGACAAC--------TACAGC--GTTAC-------CCGAAGA----------GA-- 97046 ||| || | | ||| || || ||| | || Sbjct 217445 GAGCCCACGTCCGCCTGGCTCCAGTCGGTCACGTAGCCGCCGGGGGCGCTGCTGCTGACG 217386 Query 97047 ----------AGTAGCAATCGGAAGCGGCACGGAACTCAAGATTGATCTTGACCTCGTGG 97096 |||||||||| ||| | || | ||| || |||| ||| ||||| ||| Sbjct 217385 GCTCCTGCCCAGTAGCAATCCTTGGCGTCGCGCAGCTCGAGGTTGACCTTAACCTCATGG 217326 Query 97097 TACTGGAGAGCAATAAGGGGAAGGGCAAGGCCGGGATTGCGGCAGAACCAGAACTCAAGA 97156 ||||| || || || |||||||| || ||||| || |||||||||||||||||||| || Sbjct 217325 TACTGTAGCGCGATGAGGGGAAGCGCGAGGCCCGGGTTGCGGCAGAACCAGAACTCGAGC 217266 Query 97157 GGGATGTAAAG-ATCCATCTCGGGGACGAA---GGCAGTCGTAACCGAAGGGGCAGTGAG 97212 |||||||| || ||| | |||| |||| | | | ||| ||| | | ||| | Sbjct 217265 GGGATGTACAGGATCTCGC-CGGGCACGATCATGTCGGACGTGCCCGT-GTTGTGGTGGG 217208 Query 97213 C-TGGGTAAGGGTAGGTACGTTACCGATCATGTTCTGGTAACCAACCTTCTTGCCCTCAG 97271 | | || | || | ||| || | ||||||| ||| || | || | ||| | | Sbjct 217207 GGTTGACGAGAGCCGGGATGTTGCCCACCATGTTCGCGTAGCCCAGCTGATGGCCGGCGG 217148 Query 97272 TCTGGGTAAGCTCGTTCCAGATGTGCATCCAGTCACCGTAGTGCTTGTCGATGCGCTGGC 97331 | || || || |||||||||| ||||| |||||| ||||||||||||||||||||||||| Sbjct 217147 TTTGCGTCAGTTCGTTCCAGACGTGCAGCCAGTCGCCGTAGTGCTTGTCGATGCGCTGGC 217088 Query 97332 CACCAATTTCGACCTCGGCGTACTTGATAAGATTGTGGCCGAGGTAATTGAGCCAACGGA 97391 |||| || |||| ||| | |||||| || ||||||||| | |||||||| |||| Sbjct 217087 CACCGATCTCGATCTCAACTGTCTTGATGAGGATGTGGCCGATCCAGTTGAGCCAGCGGA 217028 Query 97392 ACTTCTCACCGGAAGGGACAGAGACCTGAGGGATTGTGACCTGAAGGTATACACGCGAGA 97451 | | | || | | || | ||| | || | ||| | ||||| | || | Sbjct 217027 AGGCCCCCCCAGCGTGCACGGTGACGTCCGGCAGCTGGACGCGCAGGTACGCCCGGTGAA 216968 Query 97452 GAAGATCACCATTACGAGAAACAGTGCATGTCACGCGCTTGCCGAAGTCAGCAGAGCCGT 97511 || || || || ||||| | ||||| || || |||||| || || || ||||| | Sbjct 216967 TCAGGTCGCCGTTTCGAGAGATGGTGCACGTTACCTTCTTGCCAAAATCCGCCGAGCCAT 216908 Query 97512 TGAAGGTCTGCTCGATGGATTCCATCGAGAAGTTCGTGTGGCGTCTGTAAACAATTTTGA 97571 |||| |||||||||||||| ||||| | |||||| || ||||| | ||| || | |||| Sbjct 216907 TGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTAGACCACCTTGA 216848 Query 97572 AGAAAGTAATCTGAGGATTGCCGGTAAGGTATATATCTTGCGCGCCATACGCGACGAGCT 97631 | || || ||||| || ||||||| ||||| || || ||||||||||| ||||| |||| Sbjct 216847 AAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATAGGCGACCAGCT 216788 Query 97632 GCATTAAACCACCACCCATTTTT 97654 |||| | ||||| |||||| || Sbjct 216787 GCATAAGGCCACCGCCCATTCTT 216765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186750424828022