Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq879 120 7e-22 seq12 86.0 1e-11 >seq879 Length=48288 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || ||||| |||||| | || || || ||||||| Sbjct 3811 CAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCTGAC 3870 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || ||| |||||| || Sbjct 3871 ACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 3930 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || |||| || |||||| | Sbjct 3931 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAACATT 3990 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 3991 CAGAAGGAGTCTACGCTGCACCTGGT 4016 >seq12 Length=425388 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || |||||||| ||||||| || ||||||||||| || | ||||| ||| Sbjct 402540 ACGAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAACGTGCGGCCATCCTCC 402599 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| ||||| || || || || Sbjct 402600 AGCTGCTTGCCGGCAAAGATGAGGCGCTGCTG 402631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181758687191942