Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3865 574 1e-159 >seq3865 Length=1303 Score = 574 bits (636), Expect = 1e-159 Identities = 720/976 (74%), Gaps = 14/976 (1%) Strand=Plus/Plus Query 19514 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 19573 ||| | ||||| || | |||||| | || | || |||||||| | | |||||||| Sbjct 289 TGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATCATGATTCCT 348 Query 19574 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGA 19632 || | | |||| || ||||| ||||| || || ||| |||| ||||| |||||||| Sbjct 349 TGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCCTCCAGTTGA 407 Query 19633 CATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTT-TATGGAAACAACATCATAT 19691 ||| || || ||||| ||||| || || ||| | || || || || ||||||||||| | Sbjct 408 CATCGACGGTATCCGTGAACCAGTTTCTGGTT-CTTTATTATACGGTAACAACATCATTT 466 Query 19692 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 19751 | || || || | || | || || || || |||||||||||||| | ||||||| Sbjct 467 CTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAG 526 Query 19752 CTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19811 || || | || || ||| | |||||||| || || | |||| | | || | ||||| Sbjct 527 CTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACT 586 Query 19812 TCCTCATTGGCATCTATGCT--TACATGGGACGAGAGTGGGAACTTAGCTATC-GACTAG 19868 || | | || | | |||| |||||||| || || |||||| ||| || || | ||| Sbjct 587 TCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAG 643 Query 19869 GAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCT 19928 | ||| | || ||||| ||| || |||||||| || |||||||| || |||| || | Sbjct 644 GTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCAGTTT 703 Query 19929 TTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGG 19988 | | ||||||| | ||||| ||| ||||| || | ||||||||| ||||| || | Sbjct 704 TCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTATTTCTG 763 Query 19989 GTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC 20048 |||| ||||||| |||| | ||||||||||| ||||| ||||| || |||||||| |||| Sbjct 764 GTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCCATTCC 823 Query 20049 ACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGC 20108 ||||| | ||||| |||||||| || ||||| || ||||| ||| ||||||||||| Sbjct 824 ACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGGTTCTT 883 Query 20109 TTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTA 20166 | ||||| || || | | ||||| || |||||| | ||| |||| ||| |||||| Sbjct 884 TAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACGCTGGTTA 941 Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 | || || ||||| ||||| || || ||||||||||| ||||| ||||||||||| || Sbjct 942 CCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGGTCG 1001 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 20286 ||| || |||||||||||||| |||||||| ||||| ||||||||||| | ||||| Sbjct 1002 TTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGC 1061 Query 20287 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 20346 ||||| || | || || |||||| |||| || || | || || ||||| || || || Sbjct 1062 TTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAACCT 1121 Query 20347 GAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTG 20406 |||||||||||||| ||||| || || | ||| | |||||||| | | ||||| Sbjct 1122 TAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACACTTG 1181 Query 20407 GGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 ||||||||| |||| |||||||| | || | || || ||||| ||||| || || || Sbjct 1182 GGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCGCA 1241 Query 20467 TAACTTCCCACTTGAC 20482 |||||||| || ||| Sbjct 1242 CAACTTCCCTCTAGAC 1257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148821550363116